研究成果

第 1 到 48 筆結果，共 48 筆。

公開日期題名作者關聯scopusWOS全文
12022An integrated analysis of the cancer genome atlas data discovers a hierarchical association structure across thirty three cancer typesK.L. Tiong; N. Sintupisut; M.C. Lin; C.H. Cheng; A. Woolston; C.H. Lin; M. Ho; Y.W. Lin; S. Padakanti; C.H. Yeang PLOS Digital Health 1(12), e0000151
22022Clustering image data with a fixed embeddingChen, YB; Tiong, KL; Yeang, CH 
32022Cooperative stability renders protein complex formation more robust and controllableHsu, KL; Yen, HS ; Yeang, CH Scientific reports 12(1), 10490
42022Characterization of gene cluster heterogeneity in single-cell transcriptomic data within and across cancer typesTiong, KL; Lin, YW; Yeang, CH Biology open 11(6), bio059256
52021The C-degron pathway eliminates mislocalized proteins and products of deubiquitinating enzymesYeh, CW; Huang, WC; Hsu, PH; Yeh, KH; Wang, LC; Hsu, PW; Lin, HC; Chen, YN; Chen, SC; Yeang, CH ; Yen, HS The EMBO journal 40(7), e105846
62021Genotypes of informative loci from 1000 Genomes data allude evolution and mixing of human populationsPadakanti, S; Tiong, KL; Chen, YB; Yeang, CH Scientific reports 11, 17741
72020Population Histories of the United States Revealed through Fine-Scale Migration and Haplotype AnalysisDai, Chengzhen L.; Vazifeh, Mohammad M.; Yeang, Chen-Hsiang ; Tachet, Remi; Wells, R. Spencer; Vilar, Miguel G.; Daly, Mark J.; Ratti, Carlo; Martin, Alicia R.The American Journal of Human Genetics 106(3), 371-388
82019Modelling bistable tumour population dynamics to design effective treatment strategiesAkhmetzhanov AR; Kim JW; Sullivan R; Beckman RA; Tamayo P; Yeang CH Journal of theoretical biology 474, 88-102
92019MGSEA - a multivariate Gene set enrichment analysisTiong, KL; Yeang, CH BMC bioinformatics 20, 145
102018Explaining cancer type specific mutations with transcriptomic and epigenomic features in normal tissues.Tiong, KL; Yeang, CH Scientific reports 8, 11456
112017Exploring candidate biological functions by Boolean Function Networks for Saccharomyces cerevisiaeSimak, M.; Yeang, C.H. ; Lu, H.H.PLOS ONE 12(10), e0185475
122017Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular StatesKim, JW; Abudayyeh, OO; Yeerna, H; Yeang, CH ; Stewart, M; Jenkins, RW; Kitajima, S; Konieczkowski, DJ; Medetgul-Ernar, K; Cavazos, T; Mah, C; Ting, S; Van Allen, EM; Cohen, O; Mcdermott, J; Damato, E; Aguirre, AJ; Liang, J; Liberzon, A; Alexe, G; Doench, J; Ghandi, M; Vazquez, F; Weir, BA; Tsherniak, A; Subramanian, A; Meneses-Cime, K; Park, J; Clemons, P; Garraway, LA; Thomas, D; Boehm, JS; Barbie, DA; Hahn, WC; Mesirov, JP; Tamayo, P.Cell Systems 5(2), 105-118.e9
132017A quantitative model for the rate-limiting process of UGA alternative assignments to stop and selenocysteine codonsChen, YF; Lin, HC; Chuang, KN; Lin, CH; Yen, HS ; Yeang, CH PLoS computational biology 13(2), e1005367
142016Analysis of spatial-temporal gene expression patterns reveals dynamics and regionalization in developing mouse brain.Chou, SJ ; Wang, C; Sintupisut, N; Niou, ZX; Lin, CH; Li, KC ; Yeang, CH Scientific reports 6, 19274
152014Suppression of the SOX2 neural effector gene by PRDM1 promotes human germ cell fate in embryonic stem cellsI-Ying Lin; Feng-Lan Chiu; Chen-Hsiang Yeang ; Hsin-Fu Chen; Ching-Yu Chuang; Shii-Yi Yang; Pei-Shan Hou; Nardnisa Sintupisut; Hong-Nerng Ho; Hung-Chih Kuo ; Kuo-I Lin Stem Cell Reports 2(2), 189-204
162013An integrative characterization of recurrent molecular aberrations in glioblastoma genomesN. Sintupisut; P.L. Liu; C.H. Yeang NUCLEIC ACIDS RESEARCH 41(19), 8803-8821
172013Sequence Mutations of Genes Pertaining to Malignancy in CancerN. Sintupisut; C.H. Yeang Journal of Data Science 11(4), 673-714
182013Functional characterization of motif sequences under purifying selectionD.H. Chen; Y.F. Chang; B.Y. Liao; C.H. Yeang NUCLEIC ACIDS RESEARCH 41(4), 2105-2120
192012Impact of genetic dynamics and single-cell heterogeneity on development of nonstandard personalized medicine strategies for cancerBeckman, R. A.; Schemmann, G. S.; Yeang, C. H. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 109(36):14586-14591
202012Recurrent structural motifs reflect characteristics of distinct networksYeang, C. H. ; Huang, L. C.; Liu, W. C.
212012Evolution of domain architectures and catalytic functions of enzymesSuen, Summit; Lu, Henry Horng-Shing; Yeang, Chen-Hsiang Genome Biology and Evolution Epub ahead of print
222012Genome-wide gene expression analysis implicates the immune response and lymphangiogenesis in the pathogenesis of fetal chylothoraxYeang, Chen-Hsiang ; Ma, Gwo-Chin; Shih, Jin-Chung; Yang, Yu-Shih; Chen, Chih-Ping; Chang, Shun-Ping; Wu, Sheng-Hai; Liu, Chin-San; Kuo, Shou-Jen; Chou, Hung-Chieh; Hwu, Wuh-Liang; Cameron, Alan D.; Ginsberg, Norman A.; Chen, MingPLoS One 7(4):e34901
232011Deciphering causal and statistical relations of molecular aberrations and gene expressions in NCI-60 cell lines.Li, SD; Tagami, T; Ho, YF; Yeang, CH BMC systems biology 5(1), 186
242011Integration of metabolic reactions and gene regulation.Yeang, CH Molecular biotechnology 47(1), 70-82
252010A probabilistic graphical model of quantum systemsYeang, Chen-Hsiang 
262010Quantifying the strength of natural selection of a motif sequenceYeang, Chen-Hsiang 
272010Exact loopy belief propagation on Euler graphsYeang, Chen-Hsiang 
282010An integrated analysis of molecular aberrations in NCI-60 cell lines.Yeang, CH BMC bioinformatics 11, 495
292009A factor graph nested effects model to identify networks from genetic perturbations.Vaske, C. J.; House, C.; Luu, T.; Frank, B.; Yeang, C. H. ; Lee, N.; Stuart, J. M.PLoS Computational Biology 9(5)
302009Integration of metabolic reactions and gene regulation.Yeang, CH Methods in molecular biology (Clifton, N.J.) (New York : Springer)
312009Inferring disease-related pathways using a probabilistic epistasis model.Kanabar, P. N.; Vaske, C. J.; Yeang, C. H. ; Yildiz, F. H.; Stuart, J. M.
322008Identifying coevolving partners from paralogous gene families.Yeang, C. H. Evolutionary Bioinformatics 4:91-107
332008Combinatorial patterns of somatic gene mutations in cancer.Yeang, CH ; McCormick, F; Levine, AThe FASEB journal : official publication of the Federation of American Societies for Experimental Biology 22(8), 2605-22
342007Detecting coevolution in and among protein domains.Yeang, CH ; Haussler, DPLoS computational biology 3(11), e211
352007Detecting the coevolution of biosequences--an example of RNA interaction prediction.Yeang, CH ; Darot, JF; Noller, HF; Haussler, DMolecular biology and evolution 24(9), 2119-31
362006A joint model of regulatory and metabolic networks.Yeang, CH ; Vingron, MBMC bioinformatics 7, 332
372006Modeling the combinatorial functions of multiple transcription factors.Yeang, CH ; Jaakkola, TJournal of computational biology : a journal of computational molecular cell biology 13(2), 463-80
382006Detecting the dependent evolution of biosequences.Darot, J.; Yeang, C. H. ; Haussler, D.
392006Game theoretic algorithms for protein-DNA binding.Perez-Breva, L.; Ortiz, L. E.; Yeang, C. H. ; Jaakkola, T.
402005Validation and refinement of gene-regulatory pathways on a network of physical interactions.Yeang, CH ; Mak, HC; McCuine, S; Workman, C; Jaakkola, T; Ideker, TGenome biology 6(7), R62
412005Modeling the combinatorial functions of multiple transcription factors.Yeang, C. H. ; Jaakkola, T.
422004Physical network models.Yeang, CH ; Ideker, T; Jaakkola, TJournal of computational biology : a journal of computational molecular cell biology 11(2-3), 243-62
432003Time-series analysis of gene expression and location data.Yeang, C. H. ; Jaakkola, T.
442003Continuous Markov random walks.Yeang, C. H. ; Szummer, M.
452003Physical network models and multi-source data integration.Yeang, C. H. ; Jaakkola, T.
462002An information geometric perspective on active learning.Yeang, C. H. 
472001Molecular classification of multiple tumor types.Yeang, CH ; Ramaswamy, S; Tamayo, P; Mukherjee, S; Rifkin, RM; Angelo, M; Reich, M; Lander, E; Mesirov, J; Golub, T
482001Multiclass cancer diagnosis using tumor gene expression signatures.Ramaswamy, S; Tamayo, P; Rifkin, R; Mukherjee, S; Yeang, CH ; Angelo, M; Ladd, C; Reich, M; Latulippe, E; Mesirov, JP; Poggio, T; Gerald, W; Loda, M; Lander, ES; Golub, TRProceedings of the National Academy of Sciences of the United States of America 98(26), 15149-54