| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2014 | An Intelligent System for Identifying Acetylated Lysine on Histones and Nonhistone Proteins | Cheng-Tsung Lu; Tzong-Yi Lee; Yu-Ju Chen ; Yi-Ju Chen | BioMed research International 528650 | | | |
| 2014 | Characterization and Identification of Protein O-GlcNAcylation Sites with Substrate Specificity | Hsin-Yi Wu; Cheng-Tsung Lu; Hui-Ju Kao; Yi-Ju Chen; Yi-Ju Chen ; Tzong-Yi Lee | BMC BIOINFORMATICS 15, S1 | | | |
| 2014 | Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12 | Sakdithep Chaiyarit; Nilubon Singhto; Yi-Ju Chen; Chia-Ying Cheng; Wararat Chiangjong; Rattiyaporn Kanlaya; Henry H. N. Lam; Paleerath Peerapen; Ting-Yi Sung; Phornpimon Tipthara; Akhilesh Pandey; Terence C. W. Poon; Yu-Ju Chen; Ravi Sirdeshmukh; Maxey C. M. Chung; Visith Thongboonkerd | Journal of Proteome Research 13(7), 3160-3165 | | | |
| 2014 | DbSNO 2.0: A Resource for Exploring Structural Environment, Functional and Disease Associations, and Regulatory Networks of Protein S-Nitrosylation | Yi-Ju Chen; Cheng-Tsung Lu; Min-Gang Su; Kai-Yao Huang; Wei-Chieh Ching; Hsiao-Hsiang Yang; Yen-Chen Liao; Yu-Ju Chen ; Tzong-Yi Lee | NUCLEIC ACIDS RESEARCH 43(D1), D503-D511 | | | |
| 2015 | Enabling Low Power BEOL Compatible monolithic 3D+ nanoelectronics for IoTs Using Local and Selective Far-Infrared Ray Laser Anneal Technology | Chih-Chao Yang; Jia-Min Shieh; Tung-Ying Hsieh; Wen-Hsien Huang; Hsing-Hsiang Wang; Chang-Hong Shen; Tsung-Ta Wu; Yun-Fang Hou; Yi-Ju Chen; Yao-Jen Lee; Min-Cheng Chen; Fu-Liang Yang; Yu-Hsiu Chen; Meng-Chyi Wu; Wen-Kuan Yeh | | | | |
| 2015 | Glutathionylspermidine in the Modification of Protein SH Groups: The Enzymology and Its Application to Study Protein Glutathionylation | Jason Ching-Yao Lin; Bing-Yu Chiang; Chi-Chi Chou; Tzu-Chieh Chen; Yi-Ju Chen; Yu-Ju Chen ; Chun-Hung Lin | Molecules 20(1), 1452-1474 | | | |
| 2015 | GSHSite: Exploiting An Iteratively Statistical Method to Identify S-Glutathionylation Sites with Substrate Specificity | Yi-Ju Chen; Cheng-Tsung Lu; Kai-Yao Huang; Hsin-Yi Wu; Chen, Yu-Ju ; Tzong-Yi Lee | PLoS One 10(4):e0118752. doi: 10.1371/journal.pone.0118752 | | | |
| 2014 | Hybrid Si/TMD 2D Electronic Double Channels Fabricated Using Solid CVD Few-Layer-MoS2 Stacking for Vth Matching and CMOS-Compatible 3DFETs | Min-Cheng Chen; Chia-Yi Lin; Kai-Hsin Li; Lain-Jong Li; Chang-Hsiao Chen; Cheng-Hao Chuang; Ming-Dao Lee; Yi-Ju Chen; Yun-Fang Hou; Chang-Hsien Lin; Chun-Chi Chen; Bo-Wei Wu; Cheng-San Wu; Ivy Yang; Yao-Jen Lee; Wen-Kuan Yeh; Tahui Wang; Fu-Liang Yang; Chenming Hu | | | | |
| 2017 | iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm | Hui-Yin Chang; Ching-Tai Chen; Chu-Ling Ko; Yi-Ju Chen; Yu-Ju Chen ; Wen-Lian Hsu ; Chiun-Gung Juo; Ting-Yi Sung | Analytical Chemistry 89(24), 13128-13136 | | | |
| 2008 | MaXIC-Q: A Fully Automated Generic Tool Using Statistical and Computational Methods for Protein Quantitation Based on Stable Isotope Labeling and LC-MS | Ethan Yin-Hao Tsui; Yi-Hwa Yian; Chih-Chiang Tsou; Paul Chuan-Yih Yu; Yi-Ju Chen; Ke-Shiuan Lynn; Wen-Chi Chou; Yu-Ju Chen; Ting-Yi Sung; Wen-Lian Hsu | TR-IIS-08-004 | | | |
| 2015 | Mining Missing Membrane Proteins by High-pH Reverse Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry | Kitata, Reta Birhanu; Dimayacyac-Esleta, Baby Rorielyn; Choong, Wai-Kok; Chia-Feng Tsai; Tai-Du Lin; Chih-Chiang Tsou; Shao-Hsing Weng; Yi-Ju Chen; Pan-Chyr Yang; Arco, Susan; Nesvizhskii, Alexey; Ting-Yi Sung ; Yu-Ju Chen | Journal of Proteome Research 14(9), 3658-3669 | | | |
| 2017 | Multi-Q 2: automated and robust isobaric labeling quantitation analysis with enhanced graphical visualization of protein ratio clustering | Ching-Tai Chen; Cheng-Wei Cheng; Wei-Jhe Hsu; Hui-Yin Chang; Chu-Ling Ko; T. Mamie Lih; Yi-Ju Chen; Yu-Ju Chen; Wen-Lian Hsu; Ting-Yi Sung | | | | |
| 2020 | Palmitoyl Acyltransferase Activity of ZDHHC13 Regulates Skin Barrier Development Partly by Controlling PADi3 and TGM1 Protein Stability | Li-Ying Chen; Kuo-Ray Lin; Yi-Ju Chen; Yun-Jung Chiang; Kun-Chin Ho; Li-Fen Shen; I-Wen Song; Kai-Ming Liu; Hsin-Fang Yang-Yen; Yu-Ju Chen ; Yuan-Tsong Chen; Fu-Tong Liu ; Jeffrey JY Yen | Journal of Investigative Dermatology 140(5), 959-970.e3 | | | |
| 2020 | Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression | Yi-Ju Chen; Theodoros I Roumeliotis; Ya-Hsuan Chang; Ching-Tai Chen; Chia-Li Han; Miao-Hsia Lin; Huei-Wen Chen; Gee-Chen Chang; Yih-Leong Chang; Chen-Tu Wu; Mong-Wei Lin; Min-Shu Hsieh; Yu-Tai Wang; Yet-Ran Chen ; Inge Jonassen; Fatemeh Zamanzad Ghavidel; Ze-Shiang Lin; Kuen-Tyng Lin; Ching-Wen Chen; Pei-Yuan Sheu; Chen-Ting Hung; Ke-Chieh Huang; Hao-Chin Yang; Pei-Yi Lin; Ta-Chi Yen; Yi-Wei Lin; Jen-Hung Wang; Lovely Raghav; Chien-Yu Lin; Yan-Si Chen; Pei-Shan Wu; Chi-Ting Lai; Shao-Hsing Weng; Kang-Yi Su; Wei-Hung Chang; Pang-Yan Tsai; Ana I Robles; Henry Rodriguez; Yi-Jing Hsiao; Wen-Hsin Chang; Ting-Yi Sung ; Jin-Shing Chen; Sung-Liang Yu; Jyoti S Choudhary; Hsuan-Yu Chen ; Pan-Chyr Yang; Yu-Ju Chen | Cell 182(1), 226-244.e17 | | | |
| 2017 | Role of S-Palmitoylation by ZDHHC13 in Mitochondrial function and Metabolism in Liver | Li-Fen Shen; Yi-Ju Chen; Kai-Ming Liu; Amir N. Saleem Haddad; I-Wen Song; Hsiao-Yuh Roan; Li-Ying Chen; Jeffrey J. Y. Yen; Yu-Ju Chen ; Jer-Yuarn Wu; Yuan-Tsong Chen | Scientific Reports 7(1):2128 | | | |
| 2021 | Speciation Analysis of Cr(VI) and Cr(III) in Water with Surface-Enhanced Raman Spectroscopy | Olga Dvoynenko; Shih-Lin Lo; Yi-Ju Chen; Guan Wei Chen; Hsin-Mei Tsai; Yuh-Lin Wang ; Juen-Kai Wang | ACS Omega 6(3), 2052-2059 | | | |
| 2016 | Temporal Regulation of Lsp1 O-GlcNAcylation and Phosphorylation During Apoptosis of Activated B cells | Jung-Lin Wu; Hsin-Yi Wu; Dong-Yan Tsai; Ming-Feng Chiang; Yi-Ju Chen; Shijay Gao; Chun-Cheng Lin; Chun-Hung Lin; Kay-Hooi Khoo ; Yu-Ju Chen ; Kuo-I Lin | NATURE COMMUNICATIONS 7: 12526 | | | |
| 2015 | TMD FinFET with 4 nm Thin Body and Back Gate Control for Future Low Power Technology | Min-Cheng Chen; Kai-Shin Li; Lain-Jong Li; Ang-Yu Lu; Ming-Yang Li; Yung-Huang Chang; Chang-Hsien Lin; Yi-Ju Chen; Yun-Fang Hou; Chun-Chi Chen; Bo-Wei Wu; Cheng-San Wu; Ivy Yang; Yao-Jen Lee; Jia-Min Shieh; Wen-Kuan Yeh; Jyun-Hong Shih; Po-Cheng Su; Angada B. Sachid; Tahui Wang; Fu-Liang Yang; Chenming Hu | | | | |
| 2021 | ZIC-cHILIC Functionalized Magnetic Nanoparticle for Rapid and Sensitive Glycopeptide Enrichment from <1 µL Serum | Tiara Pradita; Yi-Ju Chen; Elias Gizaw Mernie; Sharine Noelle Bendulo; Yu-Ju Chen | Nanomaterials 11(9), 2159 | | | |
| 2021 | ZIC-cHILIC-Based StageTip for Simultaneous Glycopeptide Enrichment and Fractionation toward Large-Scale N-Sialoglycoproteomics | Yi-Ju Chen; Ta-Chi Yen; Yu-Hsien Lin; Yan-Lin Chen; Kay-Hooi Khoo ; Yu-Ju Chen | Analytical Chemistry 93(48), 15931-15940 | | | |
