Publications

Results 1-14 of 14 (Search time: 0.003 seconds).

Issue DateTitleAuthor(s)RelationscopusWOSFulltext/Archive link
12023Assessing the impacts of various factors on circular RNA reliabilityTrees-Juen Chuang ; Tai-Wei Chiang; Chia-Ying ChenLIFE SCIENCE ALLIANCE 6(5), e202201793
22022Trans-genetic effects of circular RNA expression quantitative trait loci and potential causal mechanisms in autismTe-Lun Mai; Chia-Ying Chen; Yu-Chen Chen; Tai-Wei Chiang; Trees-Juen Chuang MOLECULAR PSYCHIATRY 27, 4695-4706
32022CircMiMi: a stand‑alone software for constructing circular RNA‑microRNA‑mRNA interactions across speciesTai-Wei Chiang; Te-Lun Mai; Trees-Juen Chuang BMC Bioinformatics 23, 164
42021Comparative analyses of single-cell transcriptomic profiles between In vitro totipotent blastomere-like cells and In vivo early mouse embryonic cellsLin, Po-Yu; Yang, Denny; Chuang, Chi-Hsuan; Lin, Hsuan; Chen, Wei-Ju; Chen, Chia-Ying; Chuang, Trees-Juen ; Lai, Chien-Ying; Li, Long-Yuan; Schuyler, Scott C.; Lu, Frank Leigh; Liu, Yu-Chuan; Lu, Jean Cells 10(11), 3111
52020Genome-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autismYen-Ju Chen; Chia-Ying Chen; Te-Lun Mai; Chih-Fan Chuang; Yu-Chen Chen; Sachin Kumar Gupta; Laising Yen; Yi-Da Wang; Trees-Juen Chuang GENOME RESEARCH 30(3), 375-391
62019A-to-I RNA editing contributes to the persistence of predicted damaging mutations in populationsTe-Lun Mai; Trees-Juen Chuang GENOME RESEARCH 29(11), 1766-1776
72019Transcriptomopathies of Pre- and Post-Symptomatic Frontotemporal Dementia-like Mice with TDP-43 Depletion in Forebrain NeuronsLien-Szu Wu; Wei-Cheng Cheng; Chia-Ying Chen; Ming-Che Wu; Yi-Chi Wang; Yu-Hsiang Tseng; Trees-Juen Chuang ; C-K James ShenActa Neuropathologica Communications 7(1), 50
82019NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectorsChia-Ying Chen; Trees-Juen Chuang BMC BIOINFORMATICS 20, 3
92018Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cellsChuang, Trees-Juen ; Chen, Yen-Ju; Chen, Chia-Ying; Mai, Te-Lun; Wang, Yi-Da; Yeh, Chung­Shu; Yang, Min-Yu; Hsiao, Yu-Ting; Chang, Tien-Hsien ; Kuo, Tzu-Chien; Cho, Hsin-Hua; Shen, Chia-Ning  ; Kuo, Hung-Chih ; Lu, Mei-Yeh ; Chen, Yi-Hua; Hsieh, Shan-Chi; Chiang, Tai-WeiNUCLEIC ACIDS RESEARCH 46(7), 3671-3691
102017Assessment of imprinting- and genetic variation-dependent monoallelic expression using reciprocal allele descendants between human family triosTrees-Juen Chuang ; Yu-Hsiang Tseng; Chia-Ying Chen; Yi-Da WangSCIENTIFIC REPORTS 7, 7038
112014Is an Observed Non-co-linear RNA Product Spliced in trans, in cis or just in vitro?Chun-Ying Yu; Hsiao-Jung Liu; Li-Yuan Hung; Hung-Chih Kuo; Trees-Juen Chuang NUCLEIC ACIDS RESEARCH 42(14), 9410-9423
122014The evolution of the coding exome of the Arabidopsisspecies - the influences of DNA methylation, relative exon position, and exon lengthFeng-Chi Chen; Trees-Juen Chuang ; Hsuan-Yu Lin; Min-Kung HsuBMC EVOLUTIONARY BIOLOGY 14, 145
132014DNA methylation is associated with an increased level of conservation at nondegenerate nucleotides in mammalsTrees-Juen Chuang ; Feng-Chi ChenMolecular Biology and Evolution 31(2), 387-396
142014Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotencyChan-Shuo Wu; Chun-Ying Yu; Ching-Yu Chuang; Michael Hsiao; Cheng-Fu Kao; Hung-Chih Kuo; Trees-Juen Chuang Genome Research 24(1), 25-36