| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
1 | 2020 | Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nests | Chen, Cheng-Yu; Chen, Chih-Kuan; Chen, Yi-Ying; Fang, Andrew; Shaw, Grace Tzun-Wen; Hung, Chih-Ming ; Wang, Daryi | Microbiome 8, 129 | | | |
2 | 2020 | Structure and membership of gut microbial communities in multiple fish cryptic species under potential migratory effects | Le, MH; Wang, D | Scientific reports 10, 7547 | | | |
3 | 2020 | A network approach to investigating the key microbes and stability of gut microbial communities in a mouse neuropathic pain model | Brandon-Mong, Guo-Jie; Shaw, Grace Tzun-Wen; Chen, Wei-Hsin; Chen, Chien-Chang ; Wang, Daryi | BMC Microbiology 20, 295 | | | |
4 | 2019 | A systematic approach re-analyzing the effects of temperature disturbance on the microbial community of mesophilic anaerobic digestion. | Shaw, G.T.W.; Weng, C.Y.; Chen, C.Y.; Weng, F.C.H.; Wang, D. | SCIENTIFIC REPORTS 9, 6560 | | | |
5 | 2019 | Occurrence of zoonotic Cryptosporidium and Giardia duodenalis species/genotypes in urban rodents | Tan, TK; Low, VL; Ng, WH; Ibrahim, J; Wang, D ; Tan, CH; Chellappan, S; Lim, YAL | Parasitology international 69, 110-113 | | | |
6 | 2018 | A novel molecular and chromosomal lineage of the anthropophilic Simulium (Simulium) rufibasis subgroup (Diptera: Simuliidae) in Taiwan | Low, VL; Takaoka, H; Adler, PH; Tan, TK; Weng, FC; Chen, CY; Lim, YAL; Ya'cob, Z; Chen, CD; Sofian-Azirun, M; Wang, D | Parasitology research 117, 3137-3143 | | | |
7 | 2016 | MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles. | Shaw, GT; Pao, YY; Wang, D | BMC bioinformatics 17(1), 488 | | | |
8 | 2016 | Functional analysis for gut microbes of the brown tree frog (Polypedates megacephalus) in artificial hibernation | Weng, FCH.; Yang, YJ.; Wang, D. | BMC GENOMICS 17, 1024 | | | |
9 | 2015 | Inferring microbial interaction network from microbiome data using RMN algorithm | Tsai, K.N.; Lin, S.H.; Liu, W.C. ; Wang, D. | BMC System biology 9, 54 | | | |
10 | 2015 | Effects of host phylogeny and habitats on gut microbiomes of oriental river prawn (Macrobrachium nipponense). Society for molecular biology and evolution | Pao, Y.Y.; Wang, D. | | | | |
11 | 2015 | Effects of host phylogeny and habitats on gut microbiomes of oriental river prawn (Macrobrachium nipponense). | Tzeng, T.D.; Pao, Y.Y.; Chen, P.C.; Weng, F.C.H.; Jean, W.D.; Wang, D. | PLoS One 10(7), e0132860 | | | |
12 | 2015 | Population Structure and Historical Demography of the Oriental River Prawn (Macrobrachium nipponense) in Taiwan. | Chen, PC; Shih, CH; Chu, TJ; Wang, D ; Lee, YC; Tzeng, TD | PloS one 10(12), e0145927 | | | |
13 | 2014 | Role of antisense RNAs in evolution of yeast regulatory complexity | Daryi Wang ; Chih-Hsu Lin | | | | |
14 | 2013 | Evolution of Cis-regulatory Elements in Yeast De Novo Genes | Wang, Daryi | | | | |
15 | 2012 | Evolution of cis-regulatory elements in yeast de novo and duplicated new genes | Tsai, Z. T. Y.; Tsai, H. K. ; Cheng, J. H.; Lin, C. H.; Tsai, Y. F.; Wang, D. | BMC Genomics 13, 717 | | | |
16 | 2012 | Identification of activated cryptic 5’ splice sites using structure profiles and odds measure | Wang, D. ; Tsai, K. N. | | | | |
17 | 2012 | Analysis of the association between transcription factor binding site variants and distinct accompanying regulatory motifs in yeast | Chiang, S. F.; Swamy, K. B. S.; Tsai, Z. T. Y.; Hsu, L. T. W.; Lu, H. H. S.; Wang, D. ; Tsai, H. K. | GENE 491(2), 237-245 | | | |
18 | 2012 | Population Structure and Historical Demography of the Whiskered Velvet Shrimp (Metapenaeopsis barbata) off China and Taiwan Inferred from the Mitochondrial Control Region | Chu, T. J.; Wang, D. ; Haung, H. L.; Lin, F. J.; Tzeng, T. D. | ZOOLOGICAL STUDIES 51(1), 99-107 | | | |
19 | 2012 | Identification of Activated Cryptic 5’ Splice Sites using Structure Profiles and Odds Measure | Tsai, K. N.; Wang, D. | NUCLEIC ACIDS RESEARCH 40(10), e73 | | | |
20 | 2012 | The impact of normalization and phylogenetic information on estimating the distance for metagenomes. | Su, C. H.; Wang, T. Y.; Hsu, M. T.; Weng, F. C. H.; Kao, C. Y.; Wang, D. ; Tsai, H. K. | IEEE-ACM Transactions on Computational Biology and Bioinformatics 9(2), 619-628 | | | |
21 | 2011 | Gain and Loss of Transcription Factor Binding Sites are Common between Yeast Strains but few Contribute to Expression Variation | Wang, Chuen-Yi; Tsai, Huai-Kuang; Weng, Li-Chuan; Wang, Daryi | | | | |
22 | 2011 | Co-expression of Neighboring Genes in the Zebrafish (Danio rerio) Genome | Weng, Li-Chuan; Tsai, Huai-Kuang; Wang, Daryi | | | | |
23 | 2011 | MetaABC – an integrated Metagenomics platform for data Adjustment, Binning, and Clustering. | Su, C. H.; Hsu, M. T.; Wang, T. Y.; Chiang, S. F.; Cheng, J. H.; Weng, F. C.; Kao, C. Y.; Wang, D. ; Tsai, H. K. | BIOINFORMATICS 27(16), 2298-2299 | | | |
24 | 2011 | Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast | Swamy, B. S. K.; Chu, W. Y.; Wang, C. Y.; Tsai, H. K. ; Wang, D. | BMC Evolutionary Biology 11, 150 | | | |
25 | 2011 | Reanalyze unassigned reads in metagenomic data using conserved gene adjacency | Weng, F.C.H.; Su, C.H.; Hsu, M.T.; Wang, T.Y.; Tsai, H.K.; Wang, D. | | | | |
26 | 2011 | The impact of normalization and phylogenetic information on estimating the distance metrics for metagenomes | Su, C. H.; Tsai, H. K.; Wang, D. | | | | |
27 | 2011 | Evidence of association between nucleosome occupancy and the evolution of transcription factor binding sites in yeast | Swamy, K.B.S; Chu, W.Y.; Wang, C.Y.; Tsai, H.K.; Wang, D. | | | | |
28 | 2011 | Autosomal dominant late-onset quadriceps myopathy. Internal medicine | Chien, Y. I.; Nonaka, I.; Wang, D. | INTERNAL MEDICINE 50, 1175-1181 | | | |
29 | 2011 | Genetic variations and expansion of Whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan inferred from intron sequence | Chu, T. J.; Wang, D. ; Haung, H. L.; Lin, F. J.; Tzeng, T. D. | BIOCHEMICAL SYSTEMATICS AND ECOLOGY 39, 520–525 | | | |
30 | 2010 | Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency | Weng, F.; Su, C. -H.; Hsu, M. -T.; Wang, T. -Y.; Tsai, H. -K. ; Wang, D. | BMC Bioinformatics 11(1), 565 | | | |
31 | 2010 | Gain or loss of transcription factor binding sites (TFBSs) is involved in intra-specific expression differences in yeast | Wang, T. Z.; Tsai, H. K.; Wang, C. Y.; Chou, C. T.; Swamy, K. B. S.; Wang, D. | | | | |