Results 1-61 of 61 (Search time: 0.002 seconds).
Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link | |
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1 | 2019 | Large-scale identification and functional analysis of NLR genes in blast resistance in the Tetep rice genome sequence. | Wang, L; Zhao, L; Zhang, X; Zhang, Q; Jia, Y; Wang, G; Li, S; Tian, D; Li, WH ; Yang, S | Proceedings of the National Academy of Sciences of the United States of America 116(37), 18479-18487 | |||
2 | 2019 | Many human RNA viruses show extraordinarily stringent selective constraints on protein evolution. | Lin, JJ; Bhattacharjee, MJ; Yu, CP; Tseng, YY; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 116(38), 19009-19018 | |||
3 | 2019 | Characterizing an engineered carotenoid-producing yeast as an anti-stress chassis for building cell factories. | Liu, HL; Chang, JJ; Thia, C; Lin, YJ; Lo, SC; Huang, CC; Li, WH | Microbial cell factories 18(1), 155 | |||
4 | 2019 | Blast fungal genomes show frequent chromosomal changes, gene gains and losses, and effector gene turnover | Gomez Luciano, LB; Tsai, IJ ; Chuma, I; Tosa, Y; Chen, YH; Li, JY; Li, MY; Jade Lu, MY ; Nakayashiki, H; Li, WH | Molecular Biology and Evolution 36(6), 1148-1161 | |||
5 | 2019 | Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes. | Chang, YM; Lin, HH; Liu, WY; Yu, CP; Chen, HJ; Wartini, PP; Kao, YY; Wu, YH; Lin, JJ; Lu, MJ ; Tu, SL ; Wu, SH ; Shiu, SH; Ku, MSB; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 116(8), 3091-3099 | |||
6 | 2019 | Feather evolution from precocial to altricial birds | Chen, C-K; H-F Chuang; S-M Wu; W-H Li | Zoological Studies 58, e24 | |||
7 | 2018 | Genome-wide prediction of CRISPR/Cas9 targets in Kluyveromyces marxianus and its application to obtain a stable haploid strain. | Lee, MH; Lin, JJ; Lin, YJ; Chang, JJ; Ke, HM; Fan, WL; Wang, TY ; Li, WH | Scientific reports 8, 7305 | |||
8 | 2018 | Genetic and Molecular Basis of Feather Diversity in Birds | Ng, CS; Li, WH | Genome biology and evolution 10(10), 2572-2586 | |||
9 | 2017 | Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi clade | Ke, Huei-Mien; Prachumwat, Anuphap; Yu, Chun-Ping; Yang, Yi-Ting; Promsri, Sutitcha; Liu, Kuan-Fu; Lo, Chu-Fang; Lu, Mei-Yeh Jade; Lai, Mei-Chin; Tsai, Isheng J. ; Li, Wen-Hsiung | Scientific Reports 7, 41394 | |||
10 | 2016 | Insights into the regulation of C4 leaf development from comparative transcriptomic analysis | Huang, CF; Chang, YM; Lin, JJ; Yu, CP; Lin, HH; Liu, WY; Yeh, S; Tu, SL; Wu, SH; Ku, MS; Li, WH | Current opinion in plant biology 30, 1-10 | |||
11 | 2015 | Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield | Su-Ying Yeh; Hau-Wen Chen; Chun-Yeung Ng; Chu-Yin Lin; Tung-Hai Tseng; Wen-Hsiung Li ; Maurice S. B. Ku | Rice 8(1), 36 | |||
12 | 2015 | Uncovering MicroRNA Regulatory Hubs that Modulate Plasma Cell Differentiation | Tsai, D.-Y.; Hung, K.-H.; Lin, I-Y.; Su, S.-T.; Wu, S.-Y.; Chung, C.-H.; Wang, T.-C.; Li, W.-H. ; Shih, A. C.-C. ; Lin, K.-I | Scientific Reports 5, 17957 | |||
13 | 2015 | Gains and Losses of Transcription Factor Binding Sites in Saccharomyces cerevisiae and Saccharomyces paradoxus | Schaefke, B; Wang, TY ; Wang, CY; Li, WH | Genome Biology and Evolution 7(8), 2245-2257 | |||
14 | 2015 | Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors | Chun-Ping Yu; Sean Chun-Chang Chen; Yao-Ming Chang; Wen-Yu Liu; Hsin-Hung Lin; Jinn-Jy Lin; Hsiang June Chen; Yu-Ju Lu; Yi-Hsuan Wu; Mei-Yeh Jade Lu ; Chen-Hua Lu; Arthur Chun-Chieh Shih ; Maurice Sun-Ben Ku; Shin-Han Shiu; Shu-Hsing Wu ; Wen-Hsiung Li | Proceedings of the National Academy of Sciences of the United States of America 112(19), E2477-E2486 | |||
15 | 2015 | Integrating an algal β-carotene hydroxylase gene into a designed carotenoid-biosynthesis pathway increases carotenoid production in yeast | Jui-Jen Chang; Caroline Thia; Hao-Yeh Lin; Hsien-Lin Liu; Feng-Ju Ho; Jiunn-Tzong Wu; Ming-Che Shih ; Wen-Hsiung Li ; Chieh-Chen Huang | Bioresource Technology 184, 2-8 | |||
16 | 2015 | MicroRNA-Like Small RNAs Prediction in the Development of Antrodia cinnamomea | Lin, YL; Ma, LT; Lee, YR; Lin, SS; Wang, SY; Chang, TT; Shaw, JF; Li, WH ; Chu, FH | PLoS One 10(4), e0123245 | |||
17 | 2015 | Topographical mapping of alpha- and beta-keratins on developing chicken skin integuments: Functional interaction and evolutionary perspectives. | Wu, P; Ng, CS; Yan, J; Lai, YC; Chen, CK; Lai, YT; Wu, SM; Chen, JJ; Luo, W; Widelitz, RB; Li, WH ; Chuong, CM | Proceedings of the National Academy of Sciences of the United States of America 112(49), E6770-E6779 | |||
18 | 2015 | Dynamic association rules for gene expression data analysis. | Chen, SC; Tsai, TH; Chung, CH; Li, WH | BMC genomics 16, 786 | |||
19 | 2015 | Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution. | Ling, S; Hu, Z; Yang, Z; Yang, F; Li, Y; Lin, P; Chen, K; Dong, L; Cao, L; Tao, Y; Hao, L; Chen, Q; Gong, Q; Wu, D; Li, W; Zhao, W; Tian, X; Hao, C; Hungate, EA; Catenacci, DV; Hudson, RR; Li, WH ; Lu, X; Wu, CI | Proceedings of the National Academy of Sciences of the United States of America 112(47), E6496-E6505 | |||
20 | 2015 | A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3,000 Cancer Genomes across 9 Cancer Types. | Cheng, F; Liu, C; Lin, CC; Zhao, J; Jia, P; Li, WH ; Zhao, Z | PLoS computational biology 11(9), e1004497 | |||
21 | 2015 | Expression divergence of chemosensory genes between Drosophila sechellia and its sibling species and its implications for host shift. | Shiao, MS; Chang, JM; Fan, WL; Lu, MJ ; Notredame, C; Fang, S ; Kondo, R; Li, WH | Genome biology and evolution 7(10), 2843-2858 | |||
22 | 2014 | The prognostic significance of RUNX2 and miR-10a/10b and their inter-relationship in breast cancer | Chang, CH; Fan, TC; Yu, JC; Liao, GS; Lin, YC; Shih, A ; Li, WH ; Yu, A. | Journal of Translational Medicine 12, 257 | |||
23 | 2014 | Functional Evolution of cardiac microRNAs in heart development and functions | Lin, C.C.; Chang, Y.M. ; Pan, C.T.; Chen, C.C. ; Ling, L.; Tsao, K.C.; Yang, R.B.; Li, W.H | MOLECULAR BIOLOGY AND EVOLUTION 31(10), 2722-2734 | |||
24 | 2014 | The genome and occlusion bodies of marine Penaeus monodon nudivirus (PmNV, also known as MBV and PemoNPV) suggest that it should be assigned to a new nudivirus genus that is distinct from the terrestrial nudiviruses. | Yang, YT; Lee, DY; Wang, Y; Hu, JM; Li, WH ; Leu, JH; Chang, GD; Ke, HM; Kang, ST; Lin, SS; Kou, GH; Lo, CF | BMC genomics 15, 628 | |||
25 | 2014 | Maize and millet transcription factors annotated using comparative genomic and transcriptomic data. | Lin, JJ; Yu, CP; Chang, YM; Chen, SC; Li, WH | BMC genomics 15, 818 | |||
26 | 2014 | Studying tumorigenesis through network evolution and somatic mutational perturbations in the cancer interactome. | Cheng, F; Jia, P; Wang, Q; Lin, CC; Li, WH ; Zhao, Z. | Mol Biol Evol. 31, 2156-2169 | |||
27 | 2014 | Genomic Organization, Transcriptomic Analysis, and Functional Characterization of Avian α- and β-Keratins in Diverse Feather Forms | Ng, CS; Wu, P; Fan, WL; Yan, J; Chen, CK; Lai, YT; Wu, SM; Mao, CT; Chen, JJ; Lu, MY ; Ho, MR; Widelitz, RB; Chen, CF; Chuong, CM; Li, WH | Genome biology and evolution 6(9), 2258-2273 | |||
28 | 2014 | Genomic and transcriptomic analyses of the medicinal fungus Antrodia cinnamomea for its metabolite biosynthesis and sexual development. | Lu, MY ; Fan, WL; Wang, WF; Chen, T; Tang, YC; Chu, FH; Chang, TT; Wang, SY; Li, MY; Chen, YH; Lin, ZS; Yang, KJ; Chen, SM; Teng, YC; Lin, YL; Shaw, JF; Wang, TF ; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 111(44), E4743-E4752 | |||
29 | 2014 | A thermo- and toxin-tolerant kefir yeast for biorefinery and biofuel production | Chang, JJ; C. Y. Ho; C. T. Mao; N. Barham; Y. R. Huang; F. J. Ho; Y. C. Wu; Y. H. Hou; M. C. Shih; W. H. Li ; C. C. Huang | Applied Energy 132, 465-474 | |||
30 | 2013 | Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination. | Liu, WY; Chang, YM; Chen, SC; Lu, CH; Wu, YH; Lu, MY; Chen, DR; Shih, AC ; Sheue, CR; Huang, HC; Yu, CP; Lin, HH; Shiu, SH; Ku, M Sun-Ben; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 110(10), 3979-84 | |||
31 | 2013 | Historical Profiling of Maize Duplicate Genes Sheds Light on the Evolution of C4 Photosynthesis in Grasses | Yao-Ming Chang; Chia-Lin Chang; Wen-Hsiung Li ; Arthur Chun-Chieh Shih | Molecular Phylogenetics and Evolution 66(2), 453-462 | |||
32 | 2013 | Assembling a cellulase cocktail and a cellodextrin transporter into a yeast host for CBP ethanol production. | Chang, JJ; Ho, FJ; Ho, CY; Wu, YC; Hou, YH; Huang, CC; Shih, MC; Li, WH | Biotechnology for biofuels 6(1), 19 | |||
33 | 2013 | Establishment of the metabolite profile for an Antrodia cinnamomea health food product and investigation of its chemoprevention activity. | Wang, HC; Chu, FH; Chien, SC; Liao, JW; Hsieh, HW; Li, WH ; Lin, CC; Shaw, JF; Kuo, YH; Wang, SY | Journal of agricultural and food chemistry 61(36), 8556-64 | |||
34 | 2012 | PGASO: A synthetic biology tool for engineering a cellulolytic yeast | Chang, Jui-Jen; Ho, Cheng-Yu; Ho, Feng-Ju; Tsai, Tsung-Yu; Ke, Huei-Mien; Wang, Christine H-T; Chen, Hsin-Liang; Shih, Ming-Che ; Huang, Chieh-Chen; Li, Wen-Hsiung | Biotechnology for Biofuels 5, 53 | |||
35 | 2012 | Characterizing Regulatory and Functional Differentiation between Maize Mesophyll and Bundle Sheath Cells by Transcriptomic Analysis | Chang, YM; Liu, WY; Shih, AC; Shen, MN; Lu, CH; Lu, MY; Yang, HW; Wang, TY ; Chen, SC; Chen, SM; Li, WH ; Ku, MS | Plant physiology 160(1), 165-177 | |||
36 | 2012 | The Chicken Frizzle Feather Is Due to an α-Keratin (KRT75) Mutation That Causes a Defective Rachis | Ng, CS; Wu, P; Foley, J; Foley, A; McDonald, ML; Juan, WT ; Huang, CJ; Lai, YT; Lo, WS; Chen, CF; Leal, SM; Zhang, H; Widelitz, RB; Patel, PI; Li, WH ; Chuong, CM | PLoS Genetics 8(7), e1002748 | |||
37 | 2012 | A highly efficient β-glucosidase from the buffalo rumen fungus Neocallimastix patriciarum W5 | Chen, H. -L.; Chen, Y. -C.; Lu, M. -Y.; Chang, J. -J.; Wang, H. -T.; Ke, H. -M.; Wang, T. -Y.; Ruan, S. -K.; Wang, T. -Y. ; Hong, K. -Y.; Cho, H. -Y.; Lin, W. -T.; Shih, M. -C. ; Li, W. -H. | Biotechnology for Biofuels 5, 24 | |||
38 | 2012 | Evolution of 5′ Untranslated Region Length and Gene Expression Reprogramming in Yeasts | Lin, Z; Li, WH | Molecular biology and evolution 29(1), 81-89 | |||
39 | 2012 | Transcriptomes of mouse olfactory epithelium reveal sexual differences in odorant detection. | Shiao, MS; Chang, AY; Liao, BY; Ching, YH; Lu, MY ; Chen, SM; Li, WH | Genome biology and evolution 4(5), 703-712 | |||
40 | 2012 | MicroRNA 3' end nucleotide modification patterns and arm selection preference in liver tissues. | Li, SC; Tsai, KW; Pan, HW; Jeng, YM; Ho, MR; Li, WH | BMC systems biology 6 Suppl 2, S14 | |||
41 | 2012 | DNA replication timing and selection shape the landscape of nucleotide variation in cancer genomes. | Woo, YH; Li, WH | Nature communications 3, 1004 | |||
42 | 2012 | Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast. | Rest, JS; Bullaughey, K; Morris, GP; Li, WH | PloS one 7(2), e32274 | |||
43 | 2012 | PSC: protein surface classification. | Tseng, YY; Li, WH | Nucleic acids research 40(Web Server issue), W435-9 | |||
44 | 2012 | Classification of protein functional surfaces using structural characteristics. | Tseng, YY; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 109(4), 1170-5 | |||
45 | 2012 | Evolutionary conservation of histone modifications in mammals. | Woo, YH; Li, WH | Molecular biology and evolution 29(7), 1757-67 | |||
46 | 2011 | Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses | Wang, T. -Y. ; Chen, H. -L.; Lu, M. -Y. ; Chen, Y. -C.; Sung, H. -M.; Mao, W. -C.; Cho, H. -Y.; Ke, H. -M.; Hwa, T. -Y.; Ruan, S. -K.; Hong, K. -Y.; Wu, Y. -C.; Tsai, T. -W.; Li, W. -H. ; Shih, M. -C. | Biotechnology for Biofuels 4, 24 | |||
47 | 2011 | The evolution of aerobic fermentation in Schizosaccharomyces pombe was associated with regulatory reprogramming but not nucleosome reorganization. | Lin, Z; Li, WH | Molecular biology and evolution 28(4), 1407-1413 | |||
48 | 2011 | Antroquinonol from ethanolic extract of mycelium of Antrodia cinnamomea protects hepatic cells from ethanol-induced oxidative stress through Nrf-2 activation. | Kumar, KJ; Chu, FH; Hsieh, HW; Liao, JW; Li, WH ; Lin, JC; Shaw, JF; Wang, SY | Journal of ethnopharmacology 136(1), 168-177 | |||
49 | 2011 | Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. | Hanada, K; Sawada, Y; Kuromori, T; Klausnitzer, R; Saito, K; Toyoda, T; Shinozaki, K; Li, WH ; Hirai, MY | Molecular biology and evolution 28(1):377-382 | |||
50 | 2011 | Metabolite Profiles for Antrodia cinnamomea Fruiting Bodies Harvested at Different Culture Ages and from Different Wood Substrates. | Lin, TY; Chen, CY; Chien, SC; Hsiao, WW; Chu, FH; Li, WH ; Lin, CC; Shaw, JF; Wang, SY | Journal of agricultural and food chemistry 59(14), 7626-7635 | |||
51 | 2011 | The Relationships Among MicroRNA Regulation, Intrinsically Disordered Regions, and Other Indicators of Protein Evolutionary Rate. | Chen, SC; Chuang, TJ; Li, WH | Molecular biology and evolution 28(9), 2513-2520 | |||
52 | 2011 | Coordinated histone modifications are associated with gene expression variation within and between species. | Ha, M; Ng, DW; Li, WH ; Chen, ZJ | Genome research 21(4), 590-598 | |||
53 | 2011 | Evolutionary approach to predicting the binding site residues of a protein from its primary sequence. | Tseng, YY; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 108(13), 5313-5318 | |||
54 | 2011 | Genetically distinct coelacanth population off the northern Tanzanian coast. | Nikaido, M; Sasaki, T; Emerson, JJ; Aibara, M; Mzighani, SI; Budeba, YL; Ngatunga, BP; Iwata, M; Abe, Y; Li, WH ; Okada, N | Proceedings of the National Academy of Sciences of the United States of America 108(44), 18009-18013 | |||
55 | 2011 | Gene clustering pattern, promoter architecture, and gene expression stability in eukaryotic genomes. | Woo, YH; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 108(8), 3306-3311 | |||
56 | 2010 | Gene family size conservation is a good indicator of evolutionary rates | Chen, Feng-Chi; Chen, Chueng-Jong; Li, Wen-Hsiung ; Chuang, Trees-Juen | Molecular Biology and Evolution 27(8), 1750-1758 | |||
57 | 2010 | Natural selection on cis and trans regulation in yeasts | Emerson, JJ; Hsieh, LC; Sung, HM; Wang, TY ; Huang, CJ; Lu, HH; Lu, MY; Wu, SH ; Li, WH | Genome research 20(6), 826-836 | |||
58 | 2010 | Phosphorylated and non-phosphorylated serine and threonine residues evolve at different rates in mammals. | Chen, SC; Chen, FC; Li, WH | Molecular biology and evolution 27(11), 2548-2554 | |||
59 | 2010 | fPOP: footprinting functional pockets of proteins by comparative spatial patterns. | Tseng, YY; Chen, ZJ; Li, WH | Nucleic acids research 38(Database issue), D288-95 | |||
60 | 2010 | Adverse interactions between micro-RNAs and target genes from different species. | Tang, T; Kumar, S; Shen, Y; Lu, J; Wu, ML; Shi, S; Li, WH ; Wu, CI | Proceedings of the National Academy of Sciences of the United States of America 107(29), 12935-12940 | |||
61 | 2010 | The genetic basis of evolutionary change in gene expression levels. | Emerson, JJ; Li, WH | Philosophical transactions of the Royal Society of London. Series B, Biological sciences (UK : The Royal Society) |