Publications

Results 1-29 of 29 (Search time: 0.008 seconds).

Issue DateTitleAuthor(s)RelationscopusWOSFulltext/Archive link
12023Identification of Sexually Dimorphic Genes in Pectoral Fin as Molecular Markers for Assessing the Sex of Japanese Silver Eels (Anguilla japonica)Hsiang-Yi Hsu; Chia-Hsien Chuang; I-Hsuan Lu; Chung-Yen Lin ; Yu-San HanZoological Studies 62, 02
22022Enrichment of Prevotella intermedia in human colorectal cancer and its additive effects with Fusobacterium nucleatum on the malignant transformation of colorectal adenomasChia-Hui Lo; Deng-Chyang Wu; Shu-Wen Jao; Chang-Chieh Wu; Chung-Yen Lin ; Chia-Hsien Chuang; Ya-Bo Lin; Chien-Hsiun Chen ; Ying-Ting Chen; Jiann-Hwa Chen; Koung-Hung Hsiao; Ying-Ju Chen; Yuan-Tsong Chen ; Jaw-Yuan Wang; Ling-Hui Li JOURNAL OF BIOMEDICAL SCIENCE 29, 88
32022AI4AVP: An Antiviral Peptides Predictor in Deep Learning Approach with Generative Adversarial Network Data AugmentationTzu-Tang Lin; Yih-Yun Sun; Ching-Tien Wang; Wen-Chih Cheng; I-Hsuan Lu; Chung-Yen Lin ; Shu-Hwa ChenBioinformatics Advances 2(1), vbac080
42022The gut microbiota regulates acute foreign body reaction and tissue repair after biomaterial implantationChen, SL; Lundy, DJ; Ruan, SC; Chen, HC; Chao, YK; Cheng, YY; Prajnamitra, PR; Liao, CC; Lin, CY ; Lai, JJ; Hsieh, PC Biomaterials 289, 121807
52022Gut Microbiota Composition in Chemotherapy and Targeted Therapy of Patients with Metastatic Colorectal CancerYen-Cheng Chen; Chia-Hsien Chuang; Zhi-Feng Miao; Kwan-Ling Yip; Chung-Jung Liu; Ling-Hui Li ; Deng-Chyang Wu; Tian-Lu Cheng; Chung-Yen Lin ; Jaw-Yuan WangFrontiers in Oncology 12, 955313
62022Differences in gut microbiota correlate with symptoms and regional brain volumes in patients with late-life depressionTsai, Chia-Fen; Chuang, Chia-Hsien; Wang, Yen-Po; Lin, Ya-Bo; Tu, Pei-Chi; Liu, Pei-Yi; Wu, Po-Shan; Lin, Chung-Yen ; Lu, Ching-LiangFrontiers in Aging Neuroscience 14, 885393
72022Elegancy: Digitizing the Wisdom from Laboratories to the Cloud with Free No-Code PlatformChih-Wei Huang; Wei-Hsuan Chuang; Chung-Yen Lin ; Shu-Hwa CheniScience 25(8), 104710
82022A metagenomics study of hexabromocyclododecane degradation with a soil microbial communityYi-Jie Li; Chia-Hsien Chuang; Wen-Chih Cheng; Shu-Hwa Chen; Wen-Ling Chen; Yu-Jie Lin; Chung-Yen Lin ; Yang-hsin ShihJournal of Hazardous Materials 430, 128465
92022MetaSquare: an integrated metadatabase of 16S rRNA gene amplicon for microbiome taxonomic classificationChun-Chieh Liao; Po-Ying Fu; Chih-Wei Huang; Chia-Hsien Chuang; Yun Yen; Chung-Yen Lin ; Shu-Hwa ChenBioinformatics 38(10), 2930-2931
102022Peptide-Based Drug Predictions for Cancer Therapy Using Deep LearningYih-Yun Sun; Tzu-Tang Lin; Wen-Chih Cheng; I-Hsuan Lu; Chung-Yen Lin ; Shu-Hwa ChenPharmaceuticals 15(4), 422
112022Development of Disease-Resistance-Associated Microsatellite DNA Markers for Selective Breeding of Tilapia (Oreochromis spp.) Farmed in TaiwanChen, Che-Chun; Chang-Wen Huang; Chung-Yen Lin ; Chia-Hui Ho; Hong N. Pham; Te-Hua Hsu; Tzu-Tang Lin; Rong-Hwa Chen; Shuenn-Der Yang; Chin-I. Chang; Hong-Yi GongGenes 13(1), 99
122021AI4AMP: An Antimicrobial Peptide Predictor Using Physicochemical Property-Based Encoding Method and Deep LearningTzu-Tang Lin; Li-Yen Yang; I-Hsuan Lu; Wen-Chih Cheng; Zhe-Ren Hsu; Shu-Hwa Chen; Chung-Yen Lin mSystems 6(6), e0029921
132021The degradation mechanisms of Rhodopseudomonas palustris toward hexabromocyclododecane by time-course transcriptome analysisYi-Jie Li; Reuben Wang; Chung-Yen Lin ; Shu-Hwa Chen; Chia-Hsien Chuang; Tzu-Ho Chou; Chi-Fang Ko; Pei-Hsin Chou; Chi-Te Liu; Yang-hsin ShihChemical Engineering Journal 425, 130489
142021Identification of Genes Related to Cold Tolerance and Novel Genetic Markers for Molecular Breeding in Taiwan Tilapia (Oreochromis spp.) via Transcriptome AnalysisChu, Pei-Yun; Jia-Xian Li; Te-Hua Hsu; Hong-Yi Gong; Chung-Yen Lin ; Jung-Hua Wang; Chang-Wen HuangAnimals 1(12), 3538
152021Investigating the Transcriptomic and Expression Presence-Absence Variation Exist in Japanese Eel (Anguilla japonica), a Primitive TeleostYung-Sen Huang; Chung-Yen Lin ; Wen-Chih ChengMarine Biotechnology 23, 943-954
162021A Yes-Associated Protein (YAP) and Insulin-like Growth Factor 1 Receptor (IGF-1R) Signaling Loop Is Involved in Sorafenib Resistance in Hepatocellular CarcinomaMai-Huong T. Ngo; Sue-Wei Peng; Yung-Che Kuo; Chun-Yen Lin ; Ming-Heng Wu; Chia-Hsien Chuang; Cheng-Xiang Kao; Han-Yin Jeng; Gee-Way Lin; Thai-Yen Ling; Te-Sheng Chang; Yen-Hua HuangCancers 13(15), 3812
172021Androgenic sensitivities and ovarian gene expression profiles prior to treatment in Japanese eel (Anguilla japonica)Yung-Sen Huang; Wen-Chih Cheng; Chung-Yen Lin Marine Biotechnology 23, 430-444
182021ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seqRita Jui-Hsein Lu; Yen-Ting Liu; Chih Wei Huang; Ming-Ren Yen; Chung-Yen Lin ; Pao-Yang Chen FRONTIERS IN GENETICS 11, 618478
192020mySORT: A Web Framework by using Deconvolution Approach to Estimating Immune Cell Composition from Complex TissuesShu-Hwa Chen; Bo-Yi Yu; Wen-Yu Kuo; Ya-Bo Lin; Sheng-Yao Su; I-Hsuan Lu; Chung-Yen Lin Preprint
202020Gut Fecal Microbiota Transplant in a Mouse Model of Orthotopic Rectal CancerChen, Yen-Cheng; Miao, Zhi-Feng; Yip, Kwan-Ling; Cheng, Yi-An; Liu, Chung-Jung; Li, Ling-Hui ; Lin, Chung-Yen ; Wang, Jiunn-Wei; Wu, Deng-Chyang; Cheng, Tian-Lu; Wang, Jaw-YuanFrontiers in Oncology 10, 568012
212020Piwi reduction in the aged niche eliminates germline stem cells via Toll-GSK3 signalingKun-Yang Lin; Wen-Der Wang; Chi-Hung Lin; Elham Rastegari; Yu-Han Su; Yu-Tzu Chang; Yung-Feng Liao ; Yi-Chieh Chang; Haiwei Pi; Bo-Yi Yu; Shu-Hwa Chen; Chung-Yen Lin ; Mei-Yeh Lu ; Tsu-Yi Su; Fei-Yang Tzou; Chih-Chiang Chan; Hwei-Jan Hsu Nature Communications 11, 3147
222020Index of Cancer-Associated Fibroblasts Is Superior to the Epithelial-Mesenchymal Transition Score in Prognosis PredictionYing-Chieh Ko; Ting-Yu Lai; Shu-Ching Hsu; Fu-Hui Wang; Sheng-Yao Su; Yu-Lian Chen; Min-Lung Tsai; Chung-Chun Wu; Jenn-Ren Hsiao; Jang-Yang Chang; Yi-Mi Wu; Dan R Robinson; Chung-Yen Lin ; Su-Fang LinCancers 12, E1718
232020EpiMOLAS: an intuitive web-based framework for genome-wide DNA methylation analysisSheng-Yao Su; I-Hsuan Lu; Wen-Chih Cheng; Wei-Chun Chung; Pao-Yang Chen ; Jan-Ming Ho ; Shu-Hwa Chen; Chung-Yen Lin BMC Genomics 21, 163
242020The role of the bacterial protease Prc in the uropathogenesis of extraintestinal pathogenic Escherichia coliWen-Chun Huang; Chung-Yen Lin ; Masayuki Hashimoto; Jiunn-Jong Wu; Ming-Cheng Wang; Wei-Hung Lin; Chang-Shi Chen & Ching-Hao TengJournal of Biomedical Science 27, 14
252019Using high-throughput transcriptome sequencing to investigate the biotransformation mechanism of hexabromocyclododecane with Rhodopseudomonas palustris in waterReuben Wang; Chung-Yen Lin ; Shu-Hwa Chen; Kai-Jiun Lo; Chi-Te Liu; Tzu-Ho Chou; Yang-hsin ShihScience of the Total Environment 692, 249-258
262019SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assembliesLi-An Yang; Yu-Jung Chang; Shu-Hwa Chen; Chung-Yen Lin ; Jan-Ming Ho BMC Genomics 19, 238
272017An machine-learning approach based on quality-score and K-mer landscape for NGS de novo genome assemblyLi-An Yang; Wei-Chun Chung; Yu-Jung Chang; Shu-Hwa Chen; Jan-Ming Ho ; Ho, Jan-Ming 
282014CloudDOE: A User-Friendly Tool for Deploying Hadoop Clouds and Analyzing High-Throughput Sequencing Data with MapReduceWei-Chun Chung; Chien-Chih Chen; Jan-Ming Ho ; Chung-Yen Lin ; Wen-Lian Hsu ; Yu-Chun Wang; Der-Tsai Lee ; Feipei Lai; Chih-Wei Huang; Yu-Jung ChangPLoS One 9(6):e98146
290A Deconvolution Approach to Unveiling the Immune Microenvironment of Complex Tissues and Tumors in TranscriptomicsShu-Hwa Chen; Bo-Yi Yu; Wen-Yu Kuo; Ya-Bo Lin; Sheng-Yao Su; Wei-Hsuan Chuang; I-Hsuan Lu; Chung-Yen Lin BMC Bioinformatics