Publications

Results 1-14 of 14 (Search time: 0.003 seconds).

Issue DateTitleAuthor(s)RelationscopusWOSFulltext/Archive link
12021Somatic mutation subtypes of lung adenocarcinoma in East Asian reveal divergent biological characteristics and therapeutic vulnerabilitiesWai-Kok Choong; Ting-Yi Sung iScience 24(6), 102522
22021Comparison of different variant sequence types coupled with decoy generation methods used in concatenated target-decoy database searches for proteogenomic researchWai-Kok Choong; Ting-Yi Sung Journal of Proteomics 231, 104021
32021Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverageChing-Tai Chen; Jen-Hung Wang; Cheng-Wei Cheng; Wei-Che Hsu; Chu-Ling Ko; Wai-Kok Choong; Ting-Yi Sung Scientific Reports 11, 2233
42020Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and ProgressionYi-Ju Chen; Theodoros I Roumeliotis; Ya-Hsuan Chang; Ching-Tai Chen; Chia-Li Han; Miao-Hsia Lin; Huei-Wen Chen; Gee-Chen Chang; Yih-Leong Chang; Chen-Tu Wu; Mong-Wei Lin; Min-Shu Hsieh; Yu-Tai Wang; Yet-Ran Chen; Inge Jonassen; Fatemeh Zamanzad Ghavidel; Ze-Shiang Lin; Kuen-Tyng Lin; Ching-Wen Chen; Pei-Yuan Sheu; Chen-Ting Hung; Ke-Chieh Huang; Hao-Chin Yang; Pei-Yi Lin; Ta-Chi Yen; Yi-Wei Lin; Jen-Hung Wang; Lovely Raghav; Chien-Yu Lin; Yan-Si Chen; Pei-Shan Wu; Chi-Ting Lai; Shao-Hsing Weng; Kang-Yi Su; Wei-Hung Chang; Pang-Yan Tsai; Ana I Robles; Henry Rodriguez; Yi-Jing Hsiao; Wen-Hsin Chang; Ting-Yi Sung ; Jin-Shing Chen; Sung-Liang Yu; Jyoti S Choudhary; Hsuan-Yu Chen; Pan-Chyr Yang; Yu-Ju Chen Cell 182(1), 226-244.e17
52020Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and ProgressionY. J. Chen ; T. I Roumeliotis; Y. H. Chang; C. T. Chen; C. L. Han; M. H. Lin; H. W. Chen; G. C. Chang; Y. L. Chang; C. T. Wu; M. W. Lin; M. S. Hsieh; Y. T. Wang; Y. R. Chen ; I. Jonassen; F. Z. Ghavidel; Z. S. Lin; K. T. Lin; C. W. Chen; P. Y. Sheu; C. T. Hung; K. C. Huang; H. C. Yang; P. Y. Lin; T. C. Yen; Y. W. Lin; J. H. Wang; L. Raghav; C. Y. Lin; Y. S. Chen; P. S. Wu; C. T. Lai; S. H. Weng; K. Y. Su; W. H. Chang; Tsai; P. Y. Tsai; A. I. Robles; H. Rodriguez; Y. J. Hsiao; W. H. Chang; T. Y. Sung ; J. S. Chen; S. L. Yu; J. S. Choudhary; H. Y. Chen ; P. C. Yang; Y. J. Chen CELL 182(1), 226-244.e17
62020MinProtMaxVP: Generating a minimized number of protein variant sequences containing all possible variant peptides for proteogenomic analysisWai-Kok Choong; Jen-Hung Wang; Ting-Yi Sung Journal of Proteomics 223, 103819
72019N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encodingThejkiran Pitti; Ching-Tai Chen; Hsin-Nan Lin; Wai-Kok Choong; Wen-Lian Hsu ; Ting-Yi Sung Scientific Reports 9, 15975
82018Evaluating the Possibility of Detecting Variants in Shotgun Proteomics via LeTE-Fusion Analysis PipelineTung-Shing Mamie Lih; Wai-Kok Choong; Yu-Ju Chen ; Ting-Yi Sung Journal of Proteome Research 17(9), 2937-2952
92017iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND AlgorithmHui-Yin Chang; Ching-Tai Chen; Chu-Ling Ko; Yi-Ju Chen; Yu-Ju Chen ; Wen-Lian Hsu ; Chiun-Gung Juo; Ting-Yi Sung Analytical Chemistry 89(24), 13128-13136
102016MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identificationT. Mamie Lih; Wai-Kok Choong; Chen-Chun Chen; Cheng-Wei Cheng; Hsin-Nan Lin; Ching-Tai Chen; Hui-Yin Chang; Wen-Lian Hsu ; Ting-Yi Sung Nucleic Acids Research 44(W1), W575-580
112016iMet-Q: a user-friendly tool for metabolomics quantitation using dynamic peak-width determinationHui-Yin Chang; Ching-Tai Chen; T. Mamie Lih; Ke-Shiuan Lynn; Chiun-Gung Juo; Wen-Lian Hsu ; Ting-Yi Sung PLoS ONE 11(1), e0146112
122015Informatics View on the Challenges of Identifying Missing Proteins From Shotgun ProteomicsWai-Kok Choong; Hui-Yin Chang; Ching-Tai Chen; Chia-Feng Tsai; Wen-Lian Hsu ; Yu-Ju Chen ; Ting-Yi Sung Journal of Proteome Research 14(12), 5396-5407
132015MAGIC: An Automated N-Linked Glycoprotein Identification Tool Using a Y1-Ion Pattern Matching Algorithm and in Silico MS2 ApproachKe-Shiuan Lynn; Chen-Chun Chen; T. Mamie Lih; Cheng-Wei Cheng; Wan-Chih Su; Chun-Hao Chang; Chia-Ying Cheng; Wen-Lian Hsu ; Yu-Ju Chen ; Ting-Yi Sung Analytical Chemistry 87(4), 2466-2473
142007Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online)Hsu, Chun-Nan ; Lai, Jin-Mei; Liu, Chia-Hung; Tseng, Huei-Hun; Lin, Chih-Yun; Lin, Kuan-Ting; Yeh, Hsu-Hua; Sung, Ting-Yi ; Hsu, Wen-Lian ; Su, Li-Jen; Lee, Sheng-An; Chen, Chan-Han; Lee, Gen-Cher; Lee, D. T. ; Shiue, Yow-Ling; Yeh, Chang-Wei; Chang, Chao-Hui; Kao, Cheng-Yan; Huang, Chi-Ying F.BMC Bioinformatics 8, 1471-2105