| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
|---|---|---|---|---|---|---|
| 2017 | An machine-learning approach based on quality-score and K-mer landscape for NGS de novo genome assembly | Li-An Yang; Wei-Chun Chung; Yu-Jung Chang; Shu-Hwa Chen; Jan-Ming Ho ; Ho, Jan-Ming | ||||
| 2014 | CloudDOE: A User-Friendly Tool for Deploying Hadoop Clouds and Analyzing High-Throughput Sequencing Data with MapReduce | Wei-Chun Chung; Chien-Chih Chen; Jan-Ming Ho ; Chung-Yen Lin ; Wen-Lian Hsu ; Yu-Chun Wang; Der-Tsai Lee ; Feipei Lai; Chih-Wei Huang; Yu-Jung Chang | PLoS One 9(6):e98146 | |||
| 2012 | Enhancing De Novo Transcriptome Assembly by Incorporating Multiple Overlap Sizes | Chien-Chih Chen; Wen-Dar Lin; Yu-Jung Chang; Chuen-Liang Chen; Jan-Ming Ho | ISRN Bioinformatics 2012:816402 (9pp) | |||
| 2013 | Optimizing a MapReduce Module of Preprocessing High-Throughput DNA Sequencing Data | Wei-Chun Chung; Yu-Jung Chang; Chien-Chih Chen; Der-Tsai Lee ; Jan-Ming Ho | ||||
| 2018 | SQUAT: A Sequencing Quality Assessment Tool for Data Quality Assessments before and after Genome Assemblies | Li-An Yang; Yu-Jung Chang; Shu-Hwa Chen; Chung-Yen Lin; Jan-Ming Ho | ||||
| 2019 | SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies | Li-An Yang; Yu-Jung Chang; Shu-Hwa Chen; Chung-Yen Lin ; Jan-Ming Ho | BMC Genomics 19, 238 | |||
| 2015 | Subject-keyphrase Extraction based on Definition-Use Chain | Hung-Min Hsu; Ray-I Chang; Yu-Jung Chang; Shu-Yu Lin; You-Jyun Wang; Jan-Ming Ho | ||||
| 2015 | Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework | Chih-Hao Fang; Yu-Jung Chang; Wei-Chun Chung; Ping-Heng Hsieh; Chung-Yen Lin; Jan-Ming Ho | BMC Genomics 16(Suppl 12), S9 | |||
| 2018 | The Spiral Assembler: An Iterative Process of NGS De Novo Genome Assembly with Machine-Learning for Subset Selection on Quality-Score and K-Mer Landscape | Li-An Yang; Wei-Chun Chung; Yu-Jung Chang; Shu-Hwa Chen; Chung-Yen Lin; Jan-Ming Ho | TR-IIS-18-001 | |||
| 2014 | Using Geometric Structures to Improve the Error Correction Algorithm of High-Throughput Sequencing Data on MapReduce Framework | Wei-Chun Chung; Yu-Jung Chang; D. T. Lee ; Jan-Ming Ho |
