Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
2018 | Active DNA Demethylation by DNMT3A and DNMT3B In Vitro and of Methylated Episomal DNA in Transiently Transfected Cells | Biswanat Chatterjee; Miao-Hsia Lin; Chun-Chang Chen; Kai-Lin Peng; Mu-Sheng Wu; Mei-Chun Tseng; Yu-Ju Chen; Che-Kun James Shen | BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 1861(11), 1048-1061 | | | |
2014 | An Intelligent System for Identifying Acetylated Lysine on Histones and Nonhistone Proteins | Cheng-Tsung Lu; Tzong-Yi Lee; Yu-Ju Chen; Yi-Ju Chen | BioMed research International 528650 | | | |
2015 | Analysis of Protein Stability by the Cycloheximide Chase Assay | Shih-Han Kao; Wen-Lung Wang; Chi-Yuan Chen; Yih-Leong Chang; Yi-Ying Wu; Yi-Ting Wang; Shu-Ping Wang ; Alexey Nesvizhskii; Yu-Ju Chen; Tse-Ming Hong; Pan-Chyr Yang | BIO-PROTOCOL 5(1), e1374 | | | |
2017 | Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy | Nai-Wen Chang; Hong-Jie Dai; Yung-Yu Shih; Chi-Yang Wu; Mira Anne C Dela Rosa; Rofeamor P Obena; Yu-Ju Chen; Wen-Lian Hsu; Yen-Jen Oyang | Database (Oxford) 2017, bax082 | | | |
2014 | Characterization and Identification of Protein O-GlcNAcylation Sites with Substrate Specificity | Hsin-Yi Wu; Cheng-Tsung Lu; Hui-Ju Kao; Yi-Ju Chen; Yu-Ju Chen; Tzong-Yi Lee | BMC BIOINFORMATICS 15, S1 | | | |
2014 | Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12 | Sakdithep Chaiyarit; Nilubon Singhto; Yi-Ju Chen; Chia-Ying Cheng; Wararat Chiangjong; Rattiyaporn Kanlaya; Henry H. N. Lam; Paleerath Peerapen; Ting-Yi Sung; Phornpimon Tipthara; Akhilesh Pandey; Terence C. W. Poon; Yu-Ju Chen; Ravi Sirdeshmukh; Maxey C. M. Chung; Visith Thongboonkerd | Journal of Proteome Research 13(7), 3160-3165 | | | |
2014 | DbSNO 2.0: A Resource for Exploring Structural Environment, Functional and Disease Associations, and Regulatory Networks of Protein S-Nitrosylation | Yi-Ju Chen; Cheng-Tsung Lu; Min-Gang Su; Kai-Yao Huang; Wei-Chieh Ching; Hsiao-Hsiang Yang; Yen-Chen Liao; Yu-Ju Chen; Tzong-Yi Lee | NUCLEIC ACIDS RESEARCH 43(D1), D503-D511 | | | |
2014 | Distinct Subpopulations of Head and Neck Cancer Cells with Different Levels of Intracellular Reactive Oxygen Species Exhibit Diverse Stemness, Proliferation, and Chemosensitivity | Ching-Wen Chang; Yu-Syuan Chen; Shiu-Huey Chou; Chia-Li Han; Yu-Ju Chen; Cheng-Chieh Yang; Chih-Yang Huang; Jeng-Fan Lo | CANCER RESEARCH DOI: 10.1158/0008-5472.CAN-14-0626 | | | |
2015 | Effect of Sialylation on EGFR Phosphorylation and Resistance to Tyrosine Kinase Inhibition | Hsin-Yung Yen; Ying-Chih Liu; Nai-Yu Chen; Chia-Feng Tsai; Yi-Ting Wang; Yu-Ju Chen; Tsui-Ling Hsu; Pan-Chyr Yang; Chi-Huey Wong | Proceedings of the National Academy of Sciences of the United States of America(PNAS) 112(22), 6955-6960 | | | |
2016 | Functionalized HgTe Nanoparticles Promote Laser-Induced Solid Phase Ionization/Dissociation for Comprehensive Glycan Sequencing | Indah Primadona; Yin-Hung Lai; Rey Y. Capangpangan; Rofeamor P. Obena; Mei-Chun Tseng; Ming-Feng Huang; Huan-Tsung Chang; Shiou-Ting Li; Chung-Yi Wu; Wei-Ting Chien; Chun-Cheng Lin; Yi-Sheng Wang; Yu-Ju Chen | ANALYST 141(21), 6093-6103 | | | |
2015 | GSHSite: Exploiting An Iteratively Statistical Method to Identify S-Glutathionylation Sites with Substrate Specificity | Yi-Ju Chen; Cheng-Tsung Lu; Kai-Yao Huang; Hsin-Yi Wu; Yu-Ju Chen; Tzong-Yi Lee | PLoS One 10(4):e0118752. doi: 10.1371/journal.pone.0118752 | | | |
2014 | GSK3β controls epithelial–mesenchymal transition and tumor metastasis by CHIP-mediated degradation of Slug | Shih-Han Kao; Wen-Lung Wang; Chi-Yuan Chen; Yih-Leong Chang; Yi-Ying Wu; Yi-Ting Wang; Shu-Ping Wang ; Alexey I. Nesvizhskii; Yu-Ju Chen; Tse-Ming Hong; Pan-Chyr Yang | Oncogene 33(24), 3172-3182 | | | |
2009 | IDEAL-Q: An automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation | Chih-Chiang Tsou; Chia-Feng Tasi; Ying-Hao Tsui; Putty-Reddy Sudhir; Yi-Ting Wang; Yu-Ju Chen; Jeou-Yuan Chen; Ting-Yi Sung; Wen-Lian Hsu | IM-IIS-09-001 | | | |
2014 | Incorporating Amino Acids Composition and Functional Domains for Identifying Bacterial Toxin Proteins | Min-Gang Su; Chien-Hsun Huang; Tzong-Yi Lee; Yu-Ju Chen; Hsin-Yi Wu | BioMed Research International 2014, 972692 | | | |
2015 | Integrating proteomics with electrochemistry for identifying kinase biomarkers | Einav Amit; Rofeamor Palarca Obena; Yi-Ting Wang; Roman Zhuravel; Aaron Reyes; Shir Elbaz; Dvir Rotem; Danny Porath; Assaf Friedler; Yu-Ju Chen; Shlomo Yitzchaik | Chemical Science 6, 4756-4766 | | | |
2013 | Interaction Modes and Approaches to Glycopeptide and Glycoprotein Enrichment | Chen-Chun Chen; Wan-Chih Su; Bao-Yu Huang; Yu-Ju Chen; Hwan-Ching Tai; Rofeamor Palarca Obena | ANALYST 139 (4), 688-704 | | | |
2015 | Large-Scale Determination of Absolute Phosphorylation Stoichiometries in Human Cells by Motif-Targeting Quantitative Proteomics | Chia-Feng Tsai; Yi-Ting Wang; Hsin-Yung Yen; Chih-Chiang Tsou; Wei-Chi Ku; Pei-Yi Lin; Hsuan-Yu Chen; Alexey Nesvizhskii; Yasushi Ishihama; Yu-Ju Chen | NATURE COMMUNICATIONS 6, 6622 | | | |
2009 | MaXIC-Q Web: A Fully Automated Web Service Using Statistical and Computational Methods for Protein Quantitation Based on Stable Isotope Labeling and LC-MS | Chih-Chiang Tsou; Yin-Hao Tsui; Yi-Hwa Yian; Yi-Ju Chen; Han-Yin Yang; Chuan-Yih Yu; Ke-Shiuan Lynn; Yu-Ju Chen; Ting-Yi Sung; Wen-Lian Hsu | Nucleic Acids Research 37(Web Server issue), W661-W669 | | | |
2008 | MaXIC-Q: A Fully Automated Generic Tool Using Statistical and Computational Methods for Protein Quantitation Based on Stable Isotope Labeling and LC-MS | Ethan Yin-Hao Tsui; Yi-Hwa Yian; Chih-Chiang Tsou; Paul Chuan-Yih Yu; Yi-Ju Chen; Ke-Shiuan Lynn; Wen-Chi Chou; Yu-Ju Chen; Ting-Yi Sung; Wen-Lian Hsu | TR-IIS-08-004 | | | |
2015 | Mining Missing Membrane Proteins by High-pH Reverse Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry | Kitata, Reta Birhanu; Dimayacyac-Esleta, Baby Rorielyn; Choong, Wai-Kok; Chia-Feng Tsai; Tai-Du Lin; Chih-Chiang Tsou; Shao-Hsing Weng; Yi-Ju Chen; Pan-Chyr Yang; Arco, Susan; Nesvizhskii, Alexey; Ting-Yi Sung; Yu-Ju Chen | Journal of Proteome Research 14(9), 3658-3669 | | | |