| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2018 | Active DNA Demethylation by DNMT3A and DNMT3B In Vitro and of Methylated Episomal DNA in Transiently Transfected Cells | Biswanat Chatterjee; Miao-Hsia Lin; Chun-Chang Chen; Kai-Lin Peng; Mu-Sheng Wu; Mei-Chun Tseng; Yu-Ju Chen; Che-Kun James Shen | BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 1861(11), 1048-1061 | | | |
| 2021 | An Enzyme-Mediated Aza-Michael Addition Is Involved in the Biosynthesis of an Imidazoyl Hybrid Product of Conidiogenone B | Ranuka T. Hewage; Rou-Jie Huang; Shu-Jung Lai; Ya-Chu Lien; Shao-Hsing Weng; Dehai Li; Yu-Ju Chen; Shih-Hsiung Wu; Rong-Jie Chein ; Hsiao-Ching Lin | ORGANIC LETTERS 23(5), 1904-1909 | | | |
| 2014 | An Intelligent System for Identifying Acetylated Lysine on Histones and Nonhistone Proteins | Cheng-Tsung Lu; Tzong-Yi Lee; Yu-Ju Chen; Yi-Ju Chen | BioMed research International 528650 | | | |
| 2015 | Analysis of Protein Stability by the Cycloheximide Chase Assay | Shih-Han Kao; Wen-Lung Wang; Chi-Yuan Chen; Yih-Leong Chang; Yi-Ying Wu; Yi-Ting Wang; Shu-Ping Wang ; Alexey Nesvizhskii; Yu-Ju Chen; Tse-Ming Hong; Pan-Chyr Yang | BIO-PROTOCOL 5(1), e1374 | | | |
| 2017 | Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy | Nai-Wen Chang; Hong-Jie Dai; Yung-Yu Shih; Chi-Yang Wu; Mira Anne C Dela Rosa; Rofeamor P Obena; Yu-Ju Chen; Wen-Lian Hsu; Yen-Jen Oyang | Database (Oxford) 2017, bax082 | | | |
| 2014 | Characterization and Identification of Protein O-GlcNAcylation Sites with Substrate Specificity | Hsin-Yi Wu; Cheng-Tsung Lu; Hui-Ju Kao; Yi-Ju Chen; Yu-Ju Chen; Tzong-Yi Lee | BMC BIOINFORMATICS 15, S1 | | | |
| 2014 | Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12 | Sakdithep Chaiyarit; Nilubon Singhto; Yi-Ju Chen; Chia-Ying Cheng; Wararat Chiangjong; Rattiyaporn Kanlaya; Henry H. N. Lam; Paleerath Peerapen; Ting-Yi Sung; Phornpimon Tipthara; Akhilesh Pandey; Terence C. W. Poon; Yu-Ju Chen; Ravi Sirdeshmukh; Maxey C. M. Chung; Visith Thongboonkerd | Journal of Proteome Research 13(7), 3160-3165 | | | |
| 2014 | DbSNO 2.0: A Resource for Exploring Structural Environment, Functional and Disease Associations, and Regulatory Networks of Protein S-Nitrosylation | Yi-Ju Chen; Cheng-Tsung Lu; Min-Gang Su; Kai-Yao Huang; Wei-Chieh Ching; Hsiao-Hsiang Yang; Yen-Chen Liao; Yu-Ju Chen; Tzong-Yi Lee | NUCLEIC ACIDS RESEARCH 43(D1), D503-D511 | | | |
| 2014 | Distinct Subpopulations of Head and Neck Cancer Cells with Different Levels of Intracellular Reactive Oxygen Species Exhibit Diverse Stemness, Proliferation, and Chemosensitivity | Ching-Wen Chang; Yu-Syuan Chen; Shiu-Huey Chou; Chia-Li Han; Yu-Ju Chen; Cheng-Chieh Yang; Chih-Yang Huang; Jeng-Fan Lo | CANCER RESEARCH DOI: 10.1158/0008-5472.CAN-14-0626 | | | |
| 2015 | Effect of Sialylation on EGFR Phosphorylation and Resistance to Tyrosine Kinase Inhibition | Hsin-Yung Yen; Ying-Chih Liu; Nai-Yu Chen; Chia-Feng Tsai; Yi-Ting Wang; Yu-Ju Chen; Tsui-Ling Hsu; Pan-Chyr Yang; Chi-Huey Wong | Proceedings of the National Academy of Sciences of the United States of America(PNAS) 112(22), 6955-6960 | | | |
| 2018 | Evaluating the Possibility of Detecting Variants in Shotgun Proteomics via LeTE-Fusion Analysis Pipeline | Tung-Shing Mamie Lih; Wai-Kok Choong; Yu-Ju Chen; Ting-Yi Sung | Journal of Proteome Research 17(9), 2937-2952 | | | |
| 2016 | Functionalized HgTe Nanoparticles Promote Laser-Induced Solid Phase Ionization/Dissociation for Comprehensive Glycan Sequencing | Indah Primadona; Yin-Hung Lai; Rey Y. Capangpangan; Rofeamor P. Obena; Mei-Chun Tseng; Ming-Feng Huang; Huan-Tsung Chang; Shiou-Ting Li; Chung-Yi Wu; Wei-Ting Chien; Chun-Cheng Lin; Yi-Sheng Wang; Yu-Ju Chen | ANALYST 141(21), 6093-6103 | | | |
| 2015 | Glutathionylspermidine in the Modification of Protein SH Groups: The Enzymology and Its Application to Study Protein Glutathionylation | Jason Ching-Yao Lin; Bing-Yu Chiang; Chi-Chi Chou; Tzu-Chieh Chen; Yi-Ju Chen; Yu-Ju Chen; Chun-Hung Lin | Molecules 20(1), 1452-1474 | | | |
| 2015 | GSHSite: Exploiting An Iteratively Statistical Method to Identify S-Glutathionylation Sites with Substrate Specificity | Yi-Ju Chen; Cheng-Tsung Lu; Kai-Yao Huang; Hsin-Yi Wu; Yu-Ju Chen; Tzong-Yi Lee | PLoS One 10(4):e0118752. doi: 10.1371/journal.pone.0118752 | | | |
| 2014 | GSK3β controls epithelial–mesenchymal transition and tumor metastasis by CHIP-mediated degradation of Slug | Shih-Han Kao; Wen-Lung Wang; Chi-Yuan Chen; Yih-Leong Chang; Yi-Ying Wu; Yi-Ting Wang; Shu-Ping Wang ; Alexey I. Nesvizhskii; Yu-Ju Chen; Tse-Ming Hong; Pan-Chyr Yang | Oncogene 33(24), 3172-3182 | | | |
| 2009 | IDEAL-Q: An automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation | Chih-Chiang Tsou; Chia-Feng Tasi; Ying-Hao Tsui; Putty-Reddy Sudhir; Yi-Ting Wang; Yu-Ju Chen; Jeou-Yuan Chen; Ting-Yi Sung; Wen-Lian Hsu | IM-IIS-09-001 | | | |
| 2014 | Incorporating Amino Acids Composition and Functional Domains for Identifying Bacterial Toxin Proteins | Min-Gang Su; Chien-Hsun Huang; Tzong-Yi Lee; Yu-Ju Chen; Hsin-Yi Wu | BioMed Research International 2014, 972692 | | | |
| 2015 | Informatics View on the Challenges of Identifying Missing Proteins From Shotgun Proteomics | Wai-Kok Choong; Hui-Yin Chang; Ching-Tai Chen; Chia-Feng Tsai; Wen-Lian Hsu; Yu-Ju Chen; Ting-Yi Sung | Journal of Proteome Research 14(12), 5396-5407 | | | |
| 2015 | Integrating proteomics with electrochemistry for identifying kinase biomarkers | Einav Amit; Rofeamor Palarca Obena; Yi-Ting Wang; Roman Zhuravel; Aaron Reyes; Shir Elbaz; Dvir Rotem; Danny Porath; Assaf Friedler; Yu-Ju Chen; Shlomo Yitzchaik | Chemical Science 6, 4756-4766 | | | |
| 2013 | Interaction Modes and Approaches to Glycopeptide and Glycoprotein Enrichment | Chen-Chun Chen; Wan-Chih Su; Bao-Yu Huang; Yu-Ju Chen; Hwan-Ching Tai; Rofeamor Palarca Obena | ANALYST 139 (4), 688-704 | | | |
