| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2008 | A cDNA resource for the cephalochordate amphioxus Branchiostoma floridae. | Yu, JK; Wang, MC; Shin-I, T; Kohara, Y; Holland, LZ; Satoh, N; Satou, Y | DEVELOPMENT GENES AND EVOLUTION 218(11-12), 723-7 | | | |
| 2014 | A new copepod with transformed body plan and unique phylogenetic position parasitic in the acorn worm Ptychodera flava. | Tung, CH; Cheng, YR; Lin, CY; Ho, JS; Kuo, CH; Yu, JK; Su, YH | The Biological Bulletin 226(1), 69-80 | | | |
| 2018 | Amphioxus functional genomics and the origins of vertebrate gene regulation. | Marletaz, F; Firbas, PN; Maeso, I; Tena, JJ; Bogdanovic, O; Perry, M; Wyatt, CDR; de, la, Calle-Mustienes, E; Bertrand, S; Burguera, D; Acemel, RD; van, Heeringen, SJ; Naranjo, S; Herrera-Ubeda, C; Skvortsova, K; Jimenez-Gancedo, S; Aldea, D; Marquez, Y; Buono, L; Kozmikova, I; Permanyer, J; Louis, A; Albuixech-Crespo, B; Le, Petillon, Y; Leon, A; Subirana, L; Balwierz, PJ; Duckett, PE; Farahani, E; Aury, JM; Mangenot, S; Wincker, P; Albalat, R; Benito-Gutierrez, E; Canestro, C; Castro, F; D'Aniello, S; Ferrier, DEK; Huang, S; Laudet, V; Marais, GAB; Pontarotti, P; Schubert, M; Seitz, H; Somorjai, I; Takahashi, T; Mirabeau, O; Xu, A; Yu, JK; Carninci, P; Martinez-Morales, JR; Crollius, HR; Kozmik, Z; Weirauch, MT; Garcia-Fernandez, J; Lister, R; Lenhard, B; Holland, PWH; Escriva, H; Gomez-Skarmeta, JL; Irimia, M | Nature 564(7734), 64-70 | | | |
| 2011 | Asymmetric localization of germline markers Vasa and Nanos during early development in the amphioxus Branchiostoma floridae. | Wu, HR; Chen, YT; Su, YH; Luo, YJ; Holland, LZ; Yu, JK | Developmental Biology 353(1), 147-59 | | | |
| 2007 | Axial patterning in cephalochordates and the evolution of the organizer. | Yu, JK; Satou, Y; Holland, ND; Shin-I, T; Kohara, Y; Satoh, N; Bronner-Fraser, M; Holland, LZ. | NATURE 445(7128), 613-7 | | | |
| 2012 | BMP and Delta/Notch signaling control the development of amphioxus epidermal sensory neurons: insights into the evolution of the peripheral sensory system | Lu, TM ; Luo, YJ; Yu, JK | DEVELOPMENT 139(11), 2020-2030 | | | |
| 2012 | BMP and Delta/Notch signaling control the development of amphioxus epidermal sensory neurons: insights into the evolution of the peripheral sensory system. | Lu, TM; Luo, YJ; Yu, JK | DEVELOPMENT 139(11), 2020-30 | | | |
| 2010 | Cephalochordates (amphioxus or lancelets): a model for understanding the evolution of chordate characters. | Yu, JK; Holland, LZ | Emerging Model Organisms, A Laboratory Manual, Volume 2 (Cold Spring Harbor, New York : Cold Spring Harbor Laboratory Press) | | | |
| 2016 | Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. | Yue, JX; Kozmikova, I; Ono, H; Nossa, CW; Kozmik, Z; Putnam, NH; Yu, JK; Holland, LZ | Genome Biology and Evolution 8(8), 2387-2405 | | | |
| 2017 | Constrained vertebrate evolution by pleiotropic genes. | Hu, H; Uesaka, M; Guo, S; Shimai, K; Lu, TM ; Li, F; Fujimoto, S; Ishikawa, M; Liu, S; Sasagawa, Y; Zhang, G; Kuratani, S; Yu, JK; Kusakabe, TG; Khaitovich, P; Irie, N | Nature ecology & evolution 1, 1722-1730 | | | |
| 2015 | Discovery of germline-related genes in Cephalochordate amphioxus: A genome wide survey using genome annotation and transcriptome data. | Yue, JX; Li, KL; Yu, JK | Marine Genomics doi: 10.1016/j.margen.2015.03.010 | | | |
| 2012 | EST and transcriptome analysis of cephalochordate amphioxus--past, present and future. | Wang, YB; Chen, SH; Lin, CY; Yu, JK | Briefings in functional genomics 11(2), 96-106 | | | |
| 2017 | EvoDevo: Changes in developmental controls underlying the evolution of animal body plans. | Su, YH ; Yu, JK | Developmental biology 427(2), 177-178 | | | |
| 2009 | Evolution of genetic networks underlying the emergence of thymopoiesis in vertebrates. | Bajoghli, B; Aghaallaei, N; Hess, I; Rode, I; Netuschil, N; Tay, BH; Venkatesh, B; Yu, JK; Kaltenbach, SL; Holland, ND; Diekhoff, D; Happe, C; Schorpp, M; Boehm, T | CELL 138(1), 186-97 | | | |
| 2015 | Evolution of the new vertebrate head by co-option of an ancient chordate skeletal tissue. | Jandzik, D; Garnett, AT; Square, TA; Cattell, MV; Yu, JK; Medeiros, DM | Nature 518(7540), 534-537 | | | |
| 2015 | Hemichordate genomes and deuterostome origins. | Simakov, O; Kawashima, T; Marletaz, F; Jenkins, J; Koyanagi, R; Mitros, T; Hisata, K; Bredeson, J; Shoguchi, E; Gyoja, F; Yue, JX; Chen, YC; Freeman, RM Jr; Sasaki, A; Hikosaka-Katayama, T; Sato, A; Fujie, M; Baughman, KW; Levine, J; Gonzalez, P; Cameron, C; Fritzenwanker, JH; Pani, AM; Goto, H; Kanda, M; Arakaki, N; Yamasaki, S; Qu, J; Cree, A; Ding, Y; Dinh, HH; Dugan, S; Holder, M; Jhangiani, SN; Kovar, CL; Lee, SL; Lewis, LR; Morton, D; Nazareth, LV; Okwuonu, G; Santibanez, J; Chen, R; Richards, S; Muzny, DM; Gillis, A; Peshkin, L; Wu, M; Humphreys, T; Su, YH; Putnam, NH; Schmutz, J; Fujiyama, A; Yu, JK; Tagawa, K; Worley, KC; Gibbs, RA; Kirschner, MW; Lowe, CJ; Satoh, N; Rokhsar, DS; Gerhart, J | Nature 527(7579), 459-465 | | | |
| 2008 | Insights from the amphioxus genome on the origin of vertebrate neural crest. | Yu, JK; Meulemans, D; McKeown, SJ; Bronner-Fraser, M | GENOME RESEARCH 18(7), 1127-32 | | | |
| 2014 | On a possible evolutionary link of the stomochord of hemichordates to pharyngeal organs of chordates. | Satoh, N; Tagawa, K; Lowe, CJ; Yu, JK; Kawashima, T; Takahashi, H; Ogasawara, M; Kirschner, M; Hisata, K; Su, YH; Gerhart, J | genesis 52(12), 925-934 | | | |
| 2010 | Opposing Nodal/Vg1 and BMP signals mediate axial patterning in embryos of the basal chordate amphioxus. | Onai, T; Yu, JK; Blitz, IL; Cho, KW; Holland, LZ | DEVELOPMENTAL BIOLOGY 344(1), 377-89 | | | |
| 2016 | Regulatory circuit rewiring and functional divergence of the duplicate admp genes in dorsoventral axial patterning | Chang, YC; Pai, CY; Chen, YC; Ting, HC; Martinez, P; Telford, MJ; Yu, JK; Su, YH | DEVELOPMENTAL BIOLOGY 410(1), 108-118 | | | |
