| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2013 | Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination | Wen-Yu Liu; Yao-Ming Chang; Sean C.-C. Chen; Chen-Hua Lu; Yeh-Hwa Wu; Mei-Yeh Jade Lu; Di-Rong Chen; Arthur Chun-Chieh Shih; Chiou-Rong Sheue; Hsuan-Cheng Huang; Chun-Ping Yug; Hsin-Hung Lin; Shin-Han Shiu; Maurice S. B. Ku; Wen-Hsiung Li | Proceedings of the National Academy of Sciences of the United States of America 110(10), 3979-3984 | | | |
| 2013 | Assembler for de novo assembly of large genomes | Te-Chin Chu; Chen-Hua Lu; Tsunglin Liu; Greg C. Lee; Wen-Hsiung Li; Arthur Chun-Chieh Shih | Proceedings of the National Academy of Sciences of the United States of America 110(36), E3417-E3424 | | | |
| 2015 | Auxin Regulatory Module Evolution during C4 Plant Evolution | Yao-Ming Chang; Arthur Chun-Chieh Shih; Wen-Hsiung Li | | | | |
| 2013 | Cell-type Preference Change of Duplicate Genes Contributed to the Evolution of C4 Photosynthesis | Yao-Ming Chang; Wen-Hsiung Li; Arthur Chun-Chieh Shih | | | | |
| 2015 | Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield | Su-Ying Yeh; Hau-Wen Chen; Chun-Yeung Ng; Chu-Yin Lin; Tung-Hai Tseng; Wen-Hsiung Li; Maurice S. B. Ku | Rice 8(1), 36 | | | |
| 2011 | Functional Characterization of Cellulases Identified from the Cow Rumen Fungus Neocallimastix patriciarum W5 by Transcriptome and Secretome Analyses | Tzi-Yuan Wang; Hsin-Liang Chen; Mei-Yeh Jade Lu; Yo-Chia Chen; Huang-Mo Sung; Chi-Tang Mao; Hsing-Yi Cho; Huei-Mien Ke; Teh-Yang Hwa; Sz-Kai Ruan; Kuo-Yen Hung; Chih-Kuan Chen; Jeng-Yi Li; Yueh-Chin Wu; Yu-Hsiang Chen; Shao-Pei Chou; Ya-Wen Tsai; Te-Chin Chu; Arthur Chun-Chieh Shih; Wen-Hsiung Li; Ming-Che Shih | Biotechnology for Biofuels 4:24 | | | |
| 2003 | GS-Aligner: A Novel Tool for Aligning Genomic Sequences Using Bit-Level Operations | Arthur Chun-Chieh Shih; Wen-Hsiung Li | Molecular Biology and Evolution 20(8), 1299-1309 | | | |
| 2013 | Historical Profiling of Maize Duplicate Genes Sheds Light on the Evolution of C4 Photosynthesis in Grasses | Yao-Ming Chang; Chia-Lin Chang; Wen-Hsiung Li; Arthur Chun-Chieh Shih | Molecular Phylogenetics and Evolution 66(2), 453-462 | | | |
| 2010 | Hundreds of human miRNAs have homologs in worms or flies | Yao-Ming Chang; Yu-Ting Chuang; Wen-Hsiung Li; Arthur Chun-Chieh Shih | | | | |
| 2015 | Integrating an algal β-carotene hydroxylase gene into a designed carotenoid-biosynthesis pathway increases carotenoid production in yeast | Jui-Jen Chang; Caroline Thia; Hao-Yeh Lin; Hsien-Lin Liu; Feng-Ju Ho; Jiunn-Tzong Wu; Ming-Che Shih; Wen-Hsiung Li; Chieh-Chen Huang | Bioresource Technology 184, 2-8 | | | |
| 2016 | Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogaster | Mei-Ju May Chen; Li-Kai Chen; Yu-Shing Lai; Yu-Yu Lin; Dung-Chi Wu; Yi-An Tung; Kwei-Yan Liu; Hsueh-Tzu Shih; Yi-Jyun Chen; Yan-Liang Lin; Li-Ting Ma; Jian-Long Huang; Po-Chun Wu; Ming-Yi Hong; Fang-Hua Chu; June-Tai Wu; Wen-Hsiung Li; Chien-Yu Chen | BMC Genomics 17, 220 | | | |
| 2012 | JR-Assembler: a large-scale de novo assembly of short read sequences by jumping extension and read remapping | Te-Chin Chu; Tsunglin Liu; Chen-Hua Lu; Greg C. Lee; Wen-Hsiung Li; Arthur Chun-Chieh Shih | | | | |
| 2004 | Palindrome-like Patterns in Genomes | Arthur Chun-Chieh Shih; D. T. Lee ; Chi-Fang Chin; Hong-Yuan Mark Liao; Wen-Hsiung Li | TR-IIS-04-019 | | | |
| 2008 | Prediction of human miRNAs using tissue-selective motifs in 3\' UTRs | Yao-Ming Chang; Hsueh-Fen Juan; Tzu-Ying Lee; Ya-Ya Chang; Yao-Ming Yeh; Wen-Hsiung Li; Arthur Chun-Chieh Shih | Proceedings of the National Academy of Sciences of the United States of America 105(44), 17061-17066 | | | |
| 2012 | Revealing the Anti-tumor Effect of Artificial miRNA p-27-5p on Human Breast Carcinoma Cell Line T-47D | Chien-wei Tseng; Hsuan-cheng Huang; Arthur Chun-chieh Shih; Ya-ya Chang; Chung Cheng Hsu; Jen-yun Chang; Hsueh-fen Juan; Wen-hsiung Li | International Journal of Molecular Sciences 13(5), 6352-6369 | | | |
| 2021 | Rice transcription factor GAMYB modulates bHLH142 and is homeostatically regulated by TDR during anther tapetal and pollen development | Swee-Suak Ko ; Min-Jeng Li; Yi-Cheng Ho; Chun-Ping Yu; Ting-Ting Yang; Yi-Jyun Lin; Hung-Chien Hsing; Tien-Kuan Chen; Chung-Min Jhong; Wen-Hsiung Li; Maurice Sun-Ben Ku | JOURNAL OF EXPERIMENTAL BOTANY 72(13), 4888-4903 | | | |
| 2017 | Systematic Analysis of Dynamic Roles of TFs and MicroRNAs in Pressure Overload Cardiac Hypertrophy | Yao-Ming Chang; Ling Li; Ya-Ting Chang; Wen-Hsiung Li; Arthur Chun-Chieh Shih; Chien-Chang Chen | | | | |
| 2014 | The prognostic significance of RUNX2 and miR-10a/10b and their inter-relationship in breast cancer | Chih-Hao Chang; Tan-Chi Fan; Jyh-Cherng Yu; Guo-Shiou Liao; You-Chin Lin; Arthur Chun-Chieh Shih; Wen-Hsiung Li; Alice Lin-Tsing Yu | Journal of Translational Medicine 12, 257 | | | |
| 2017 | Three TF Co-expression Modules Regulate Pressure-Overload Cardiac Hypertrophy in Male Mice | Yao-Ming Chang; Li Ling; Ya-Ting Chang; Yu-Wang Chang; Wen-Hsiung Li; Arthur Chun-Chieh Shih; Chien-Chang Chen | Scientific Reports 7(1), 7560 | | | |
| 2015 | Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors | Chun-Ping Yu; Sean Chun-Chang Chen; Yao-Ming Chang; Wen-Yu Liu; Hsin-Hung Lin; Jinn-Jy Lin; Hsiang June Chen; Yu-Ju Lu; Yi-Hsuan Wu; Mei-Yeh Jade Lu; Chen-Hua Lu; Arthur Chun-Chieh Shih; Maurice Sun-Ben Ku; Shin-Han Shiu; Shu-Hsing Wu; Wen-Hsiung Li | Proceedings of the National Academy of Sciences of the United States of America 112(19), E2477-E2486 | | | |
