| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2021 | Comparison of different variant sequence types coupled with decoy generation methods used in concatenated target-decoy database searches for proteogenomic research | Wai-Kok Choong; Ting-Yi Sung | Journal of Proteomics 231, 104021 | | | |
| 2017 | Decoding the effect of isobaric substitutions on identifying missing proteins and variant peptides in human proteome | Wai-Kok Choong; T. Mamie Lih; Yu-Ju Chen; Ting-Yi Sung | Journal of Proteome Research 16(12), 4415-4424 | | | |
| 2018 | Evaluating the Possibility of Detecting Variants in Shotgun Proteomics via LeTE-Fusion Analysis Pipeline | Tung-Shing Mamie Lih; Wai-Kok Choong; Yu-Ju Chen ; Ting-Yi Sung | Journal of Proteome Research 17(9), 2937-2952 | | | |
| 2018 | Evaluating the possibility of misinterpreting MS/MS spectra caused by isobaric substitutions: a case study on human missing proteins | Jen-Hung Wang; Tung-Shing Mamie Lih; Wai-Kok Choong; Wen-Lian Hsu; Ting-Yi Sung | | | | |
| 2015 | Informatics View on the Challenges of Identifying Missing Proteins From Shotgun Proteomics | Wai-Kok Choong; Hui-Yin Chang; Ching-Tai Chen; Chia-Feng Tsai; Wen-Lian Hsu ; Ting-Yi Sung ; Yu-Ju Chen | Journal of Proteome Research 14(12), 5396-5407 | | | |
| 2016 | MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification | T. Mamie Lih; Wai-Kok Choong; Chen-Chun Chen; Cheng-Wei Cheng; Hsin-Nan Lin; Ching-Tai Chen; Hui-Yin Chang; Wen-Lian Hsu ; Ting-Yi Sung | Nucleic Acids Research 44(W1), W575-580 | | | |
| 2019 | MinProtMaxVP: Generating a minimized number of protein variant sequences containing all possible variant peptides by solving a set covering problem | Wai-Kok Choong; Jen-Hung Wang; Ting-Yi Sung | TM-IIS-19-001 | | | |
| 2020 | MinProtMaxVP: Generating a minimized number of protein variant sequences containing all possible variant peptides for proteogenomic analysis | Wai-Kok Choong; Jen-Hung Wang; Ting-Yi Sung | Journal of Proteomics 223, 103819 | | | |
| 2021 | Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage | Ching-Tai Chen; Jen-Hung Wang; Cheng-Wei Cheng; Wei-Che Hsu; Chu-Ling Ko; Wai-Kok Choong; Ting-Yi Sung | Scientific Reports 11, 2233 | | | |
| 2022 | Multiaspect Examinations of Possible Alternative Mappings of Identified Variant Peptides: A Case Study on the HEK293 Cell Line | Wai-Kok Choong; Ting-Yi Sung | ACS Omega 7(19), 16454-16467 | | | |
| 2019 | N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding | Thejkiran Pitti; Ching-Tai Chen; Hsin-Nan Lin; Wai-Kok Choong; Wen-Lian Hsu ; Ting-Yi Sung | Scientific Reports 9, 15975 | | | |
| 2017 | Phosphoproteomics reveals HMGA1, a CK2 substrate, as a drug-resistant target in non-small cell lung cancer | Yi-Ting Wang; Szu-Hua Pan; Chia-Feng Tsai; Ting-Chun Kuo; Yuan-Ling Hsu; Hsin-Yung Yen; Wai-Kok Choong; Hsin-Yi Wu; Yen-Chen Liao; Tse-Ming Hong; Ting-Yi Sung; Pan-Chyr Yang; Yu-Ju Chen | Scientific Reports 7, 44021 | | | |
| 2014 | Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography | Chia-Feng Tsai; Chuan-Chih Hsu; Jo-Nan Hung; Yi-Ting Wang; Wai-Kok Choong; Ming-Yao Zeng; Pei-Yi Lin; Ruo-Wei Hong; Ting-Yi Sung; Yu-Ju Chen | Analytical Chemistry 86(1), 685-693 | | | |
| 2021 | Somatic mutation subtypes of lung adenocarcinoma in East Asian reveal divergent biological characteristics and therapeutic vulnerabilities | Wai-Kok Choong; Ting-Yi Sung | iScience 24(6), 102522 | | | |
| 2018 | WinProphet: a user-friendly pipeline management system based on Trans-Proteomic Pipeline | Ching-Tai Chen; Chu-Ling Ko; Wai-Kok Choong; Jen-Hung Wang; Wen-Lian Hsu; Ting-Yi Sung | | | | |
| 2019 | WinProphet: A User-Friendly Pipeline Management System for Proteomics Data Analysis Based on Trans-Proteomic Pipeline | Ching-Tai Chen; Chu-Ling Ko; Wai-Kok Choong; Jen-Hung Wang; Wen-Lian Hsu; Ting-Yi Sung | Analytical Chemistry 91(15), 9403-9406 | | | |
