| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2012 | A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni. | Protasio, AV; Tsai, IJ; Babbage, A; Nichol, S; Hunt, M; Aslett, MA; De Silva, N; Velarde, GS; Anderson, TJ; Clark, RC; Davidson, C; Dillon, GP; Holroyd, NE; LoVerde, PT; Lloyd, C; McQuillan, J; Oliveira, G; Otto, TD; Parker-Manuel, SJ; Quail, MA; Wilson, RA; Zerlotini, A; Dunne, DW; Berriman, M | PLoS neglected tropical diseases 6(1), e1455 | | | |
| 2014 | Assessment of helminth biodiversity in wild rats using 18S rDNA based metagenomics. | Tanaka, R; Hino, A; Tsai, IJ; Palomares-Rius, JE; Yoshida, A; Ogura, Y; Hayashi, T; Maruyama, H; Kikuchi, T | PloS one 9(10), e110769 | | | |
| 2014 | Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants. | Tsai, IJ; Tanaka, E; Masuya, H; Tanaka, R; Hirooka, Y; Endoh, R; Sahashi, N; Kikuchi, T | Genome biology and evolution 6(4), 861-72 | | | |
| 2010 | Conservation of recombination hotspots in yeast. | Tsai, IJ; Burt, A; Koufopanou, V | Proceedings of the National Academy of Sciences of the United States of America 107(17), 7847-52 | | | |
| 2012 | Conversion from mouse embryonic to extra-embryonic endoderm stem cells reveals distinct differentiation capacities of pluripotent stem cell states. | Cho, LT; Wamaitha, SE; Tsai, IJ; Artus, J; Sherwood, RI; Pedersen, RA; Hadjantonakis, AK; Niakan, KK | Development (Cambridge, England) 139(16), 2866-77 | | | |
| 2014 | Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi. | Palomares-Rius, JE; Hirooka, Y; Tsai, IJ; Masuya, H; Hino, A; Kanzaki, N; Jones, JT; Kikuchi, T | BMC evolutionary biology 14, 69 | | | |
| 2015 | Estimating the Fitness Effects of New Mutations in the Wild Yeast Saccharomyces paradoxus. | Koufopanou, V; Lomas, S; Tsai, IJ; Burt, A | Genome biology and evolution 7(7), 1887-95 | | | |
| 2016 | Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster. | Vicente, CS; Nascimento, FX; Barbosa, P; Ke, HM; Tsai, IJ; Hirao, T; Cock, PJ; Kikuchi, T; Hasegawa, K; Mota, M | Microbial ecology 72(3), 669-681 | | | |
| 2013 | Genetic and molecular basis of drug resistance and species-specific drug action in schistosome parasites. | Valentim, CL; Cioli, D; Chevalier, FD; Cao, X; Taylor, AB; Holloway, SP; Pica-Mattoccia, L; Guidi, A; Basso, A; Tsai, IJ; Berriman, M; Carvalho-Queiroz, C; Almeida, M; Aguilar, H; Frantz, DE; Hart, PJ; LoVerde, PT; Anderson, TJ | Science (New York, N.Y.) 342(6164), 1385-9 | | | |
| 2015 | Genetic Differentiation and Spatial Structure of Phellinus noxius, the Causal Agent of Brown Root Rot of Woody Plants in Japan. | Akiba, M; Ota, Y; Tsai, IJ; Hattori, T; Sahashi, N; Kikuchi, T | PloS one 10(10), e0141792 | | | |
| 2011 | Genome watch: Honey, I shrunk the mimiviral genome. | Tsai, IJ | Nature reviews. Microbiology 9(8), 563 | | | |
| 2015 | Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits. | Palomares-Rius, JE; Tsai, IJ; Karim, N; Akiba, M; Kato, T; Maruyama, H; Takeuchi, Y; Kikuchi, T | BMC genomics 16(1), 845 | | | |
| 2011 | Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. | Kikuchi, T; Cotton, JA; Dalzell, JJ; Hasegawa, K; Kanzaki, N; McVeigh, P; Takanashi, T; Tsai, IJ; Assefa, SA; Cock, PJ; Otto, TD; Hunt, M; Reid, AJ; Sanchez-Flores, A; Tsuchihara, K; Yokoi, T; Larsson, MC; Miwa, J; Maule, AG; Sahashi, N; Jones, JT; Berriman, M | PLoS pathogens 7(9), e1002219 | | | |
| 2012 | Germline transgenesis and insertional mutagenesis in Schistosoma mansoni mediated by murine leukemia virus. | Rinaldi, G; Eckert, SE; Tsai, IJ; Suttiprapa, S; Kines, KJ; Tort, JF; Mann, VH; Turner, DJ; Berriman, M; Brindley, PJ | PLoS pathogens 8(7), e1002820 | | | |
| 2016 | Glycoside Hydrolase (GH) 45 and 5 Candidate Cellulases in Aphelenchoides besseyi Isolated from Bird’s-Nest Fern. | Wu, GL; Kuo, TH; Tsay, TT; Tsai, IJ; Chen, PJ | PloS one 11(7), e0158663 | | | |
| 2016 | HIV-1 Integrates Widely throughout the Genome of the Human Blood Fluke Schistosoma mansoni. | Suttiprapa, S; Rinaldi, G; Tsai, IJ; Mann, VH; Dubrovsky, L; Yan, HB; Holroyd, N; Huckvale, T; Durrant, C; Protasio, AV; Pushkarsky, T; Iordanskiy, S; Berriman, M; Bukrinsky, MI; Brindley, PJ | PLoS pathogens 12(10), e1005931 | | | |
| 2010 | Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. | Tsai, IJ; Otto, TD; Berriman, M | Genome biology 11(4), R41 | | | |
| 2018 | Inferring synteny between genome assemblies: a systematic evaluation. | Liu, D; Hunt, M; Tsai, IJ | BMC bioinformatics 19(1), 26 | | | |
| 2009 | Population genomics of domestic and wild yeasts. | Liti, G; Carter, DM; Moses, AM; Warringer, J; Parts, L; James, SA; Davey, RP; Roberts, IN; Burt, A; Koufopanou, V; Tsai, IJ; Bergman, CM; Bensasson, D; O’Kelly, MJ; van Oudenaarden, A; Barton, DB; Bailes, E; Nguyen, AN; Jones, M; Quail, MA; Goodhead, I; Sims, S; Smith, F; Blomberg, A; Durbin, R; Louis, EJ | Nature 458(7236), 337-41 | | | |
| 2008 | Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle. | Tsai, IJ; Bensasson, D; Burt, A; Koufopanou, V | Proceedings of the National Academy of Sciences of the United States of America 105(12), 4957-62 | | | |
