| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2024 | A longer time to relapse is associated with a larger increase in differences between paired primary and recurrent IDH wild-type glioblastomas at both the transcriptomic and genomic levels | Wei-Min Ho; Chia-Ying Chen; Tai-Wei Chiang; Trees-Juen Chuang | ACTA NEUROPATHOLOGICA COMMUNICATIONS 12, 77 | | | |
| 2018 | An evolutionary landscape of A-to-I RNA editome across metazoan species | Li-Yuan Hung; Yen-Ju Chen; Te-Lun Mai; Chia-Ying Chen; Min-Yu Yang; Tai-Wei Chiang; Yi-Da Wang; Trees-Juen Chuang | Genome Biology and Evolution 10(2), 521-537 | | | |
| 2023 | Assessing the impacts of various factors on circular RNA reliability | Trees-Juen Chuang ; Tai-Wei Chiang; Chia-Ying Chen | LIFE SCIENCE ALLIANCE 6(5), e202201793 | | | |
| 2022 | CircMiMi: a stand‑alone software for constructing circular RNA‑microRNA‑mRNA interactions across species | Tai-Wei Chiang; Te-Lun Mai; Trees-Juen Chuang | BMC Bioinformatics 23, 164 | | | |
| 2023 | Detecting intragenic trans-splicing events from non-co-linearly spliced junctions by hybrid sequencing | Yu-Chen Chen; Chia-Ying Chen; Tai-Wei Chiang; Ming-Hsien Chan; Michael Hsiao ; Huei-Mien Ke; Isheng Jason Tsai ; Trees-Juen Chuang | Nucleic Acids Research 51(15), 7777-7797 | | | |
| 2024 | FL-circAS: an integrative resource and analysis for full-length sequences and alternative splicing of circular RNAs with nanopore sequencing | Tai-Wei Chiang; Song-En Jhong; Yu-Chen Chen; Chia-Ying Chen; Wei-Sheng Wu; Trees-Juen Chuang | NUCLEIC ACIDS RESEARCH 52(D1), D115-D123 | | | |
| 2014 | Impacts of Pretranscriptional DNA Methylation, Transcriptional Transcription Factor, and Posttranscriptional microRNA Regulations on Protein Evolutionary Rate | Trees-Juen Chuang ; Tai-Wei Chiang | Genome Biology and Evolution 6(6), 1530-1541 | | | |
| 2016 | NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing, and circular RNA) with a good balance between sensitivity and precision | Trees-Juen Chuang; Chan-Shuo Wu; Chia-Ying Chen; Li-Yang Hung; Tai-Wei Chiang; Min-Yu Yang | NUCLEIC ACIDS RESEARCH 44(3), e29. (SCI: 9.112; ranking: 6.9%) | | | |
| 2022 | Trans-genetic effects of circular RNA expression quantitative trait loci and potential causal mechanisms in autism | Te-Lun Mai; Chia-Ying Chen; Yu-Chen Chen; Tai-Wei Chiang; Trees-Juen Chuang | MOLECULAR PSYCHIATRY 27, 4695-4706 | | | |
