| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2004 | 5’ long serial analysis of gene expression (LongSAGE) and 3’ LongSAGE for transcriptome characterization and genome annotation | Wei, Chia Lin; Ng, Patrick; Chiu, Kuo Ping; Wong, Chee Hong; Ang, Chin Chin; Lipovich, Leonard; Liu, Edison T.; Ruan, Yijun | Proceedings of the National Academy of Sciences of the United States of America 101, 11701-11706 | | | |
| 2006 | A global mapping of p53 transcription factor binding sites in the human genome | Wei, Chia Lin; Wu, Qiang; Vega, Vinsensius B.; Chiu, Kuo Ping; Ng, Patrick; Zhang, Tao; Shahab, Atif; Ridwan, Azmi; Fu, YuTao; Weng, Zhiping; Liu, Jian Jun; Kuznetsov, Vladimir A.; Sung, Ken; Lim, Bing; Liu, Edison; Yu, Qiang; Ng, Huck Hui; Ruan, Yijun | Cell 124, 207-219 | | | |
| 2009 | De-Novo identification of PPAR /RXR binding sites and direct targets during adipogenesis | Hamza, Mohamed Sabry; Pott, Sebastian; Vega, Vinsensius B.; Thomsen, Jane S.; Kandhadayar, Gopalan Srinivasan; Ng, Patrick; Chiu, Kuo Ping; Pettersson, Sven; Wei, Chia Lin; Ruan, Yijun; Liu, Edison T. | PLoS ONE 4(3): e4907 | | | |
| 2005 | Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation | Ng, Patrick; Wei, Chia Lin; Sung, Wing-Kin Ken; Chiu, Kuo Ping; Lipovich, Leonard; Ang, Chin Chin; Gupta, Sanjay; Shahab, Atif; Wong, Chee Hong; Ridwan, Azmi; Liu, Edison T.; Ruan, Yijun | Nature Methods 2, 105-111 | | | |
| 2007 | Genome-wide Mapping of RELA(p65) Binding Identifies E2F1 as a Transcriptional Activator Recruited by NF-kB upon TLR4 Activation | Lim, Ching-Aeng; Yao, Fei; Wong, Joyce Jing-Yi; George, Joshy; Xu, Han; Chiu, Kuo Ping; Sung, Wing-Kin; Lipovich, Leonard; Vega, Vinsensius B.; Chen, Joanne; Shahab, Atif; Zhao, Xiao Dong; Hibberd, Martin; Wei, Chia-Lin; Lim, Bing; Ng, Huck-Hui; Ruan, Yijun; Chin, Keh-Chuang | Molecular Cell 27(4), 622-635 | | | |
| 2006 | Global mapping of c-Myc binding sites and target gene networks in human B cells | Zeller, Karen I.; Zhao, XiaoDong; Lee, Charlie W. H.; Chiu, Kuo Ping; Ooi, Hong Sain; Yao, Fei; Shahab, Atif; Yong, How Choong; Fu, YuTao; Weng, Zhiping; Kuznetsov, Vladimir A.; Sung, Wing-Kin; Ruan, Yijun; Dang, Chi V.; Wei, Chia-Lin | Proceedings of the National Academy of Sciences of the United States of America 103, 17834-17839 | | | |
| 2006 | Multiplex sequencing of Paired-End Ditag (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptome and genomes | Ng, Patrick; Tan, Jack J. S.; Ooi, Hong Sain; Lee, Yen Ling; Chiu, Kuo Ping; Fullwood, Melissa J.; Perbost, Clotilde; Du, Lei; Sung, Wing-Kin; Wei, Chia-Lin; Ruan, Yijun | Nucleic Acid Research 34(12), e84 | | | |
| 2007 | Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes | Chiu, Kuo Ping; Ariyaratne, Pramila; Xu, Han; Tan, Adrian; Ng, Patrick; Liu, Edison Tak-Bun; Ruan, Yijun; Wei, Chia-Lin; Sung, Wing-Kin Ken | BMC Cancer 7, 109 | | | |
| 2006 | PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data | Chiu, Kuo Ping; Wong, Chee-Hong; Chen, Qiongyu; Ariyaratne, Pramila; Ooi, Hong Sain; Wei, Chia-Lin; Sung, Wing-Kin Ken; Ruan, Yijun | BMC Bioinformatics 7, 390 | | | |
| 2006 | The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. | Loh, Yuin-Han; Wu, Qiang; Chew, Joon-Lin; Vega, Vinsensius B.; Zhang, Weiwei; Chen, Xi; Bourque, Guillaume; George, Joshy; Leong, Bernard; Liu, Jun; Wong, Kee-Yew; Sung, Ken W.; Lee, Charlie W. H.; Zhao, Xiao-Dong; Chiu, Kuo-Ping; Lipovich, Leonard; Kuznetsov, Vladimir A.; Robson, Paul; Stanton, Lawrence W.; Wei, Chia-Lin; Ruan, Yijun; Lim, Bing; Ng, Huck-Hui | Nature Genetics 38, 431-440 | | | |
| 2008 | The Use of Multiple Displacement Amplification to Amplify Complex DNA libraries | Fullwood, Melissa; Tan, Jack; Ng, Patrick; Chiu, Kuo Ping; Liu, Jun; Wei, Chia Lin; Ruan, Yijun | Nucleic Acid Research 36(5), e32 | | | |
| 2007 | Whole genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells | Zhao, Xiao Dong; Han, Xu; Chew, Joon Lin; Liu, Jun; Chiu, Kuo Ping; Choo, Andre; Orlov, Yuriy L.; Sung, Wing-Kin; Shahab, Atif; Kuznetsov, Vladimir A.; Bourque, Guillaume; Oh, Steve; Ruan, Yijun; Ng, Huck-Hui; Wei, Chia-Lin | Cell Stem Cell 1(3), 286-298 | | | |
| 2007 | Whole-Genome Cartography of Estrogen Receptor alpha Binding Sites | Lin, Chin-Yo; Vega, Vinsensius B; Thomsen, Jane S; Zhang, Tao; Kong, Say Li; Xie, Min; Chiu, Kuo Ping; Lipovich, Leonard; Barnett, Daniel H; Stossi, Fabio; Yeo, Ailing; George, Joshy; Kuznetsov, Vladimir A; Lee, Yew Kok; Charn, Tze Howe; Palanisamy, Nallasivam; Miller, Lance D; Cheung, Edwin; Katzenellenbogen, Benita S; Ruan, Yijun; Bourque, Guillaume; Wei, Chia-Lin; Liu, Edison T | PLoS Genet 3(6), e87 | | | |
