| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2015 | Early life history of Neocalanus plumchrus (Calanoida: Copepoda) in the western subarctic Pacific | Fujioka, HA; Machida, RJ; Tsuda, A | PROGRESS IN OCEANOGRAPHY 137, 196-208 | | | |
| 2012 | Global phylogeography of the deep-sea pelagic chetognath Eukrohnia hamata | Miyamoto, H; Machida, RJ; Nishida, S | Progress in Oceanography 104, 99-109 | | | |
| 2018 | MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database | Leray, M; Ho; SL; Lin, IJ; Machida, RJ | BIOINFORMATICS 34(21), 3753-3754 | | | |
| 2012 | PCR primers for metazoan mitochondrial 12S ribosomal DNA sequences | Machida, RJ; Kweskin, M; Knowlton, N | PLoS One 7(4), e35887 | | | |
| 2012 | PCR primers for metazoan nuclear 18S and 28S ribosomal DNA sequences | Machida, RJ; Knowlton, N | PLoS One 7(9), e46180 | | | |
| 2018 | Taiwanese Leucothoidae (Crustacea: Amphipoda), Including Three New Species from Dongsha Atoll | White, KN; Machida, RJ | ZOOLOGICAL STUDIES 57, 47 | | | |
