| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2021 | A data-independent acquisition-based global phosphoproteomics system enables deep profiling | Kitata, Reta Birhanu; Choong, Wai-Kok; Tsai, Chia-Feng; Lin, Pei-Yi; Chen, Bo-Shiun; Chang, Yun-Chien; Nesvizhskii, Alexey I.; Sung, Ting-Yi; Chen, Yu-Ju | Nature Communications 12, 2539 | | | |
| 2009 | A Simple Label-free LC-MS/MS Strategy Towards Comprehensive Phosphoproteomics View that Depict the Mechanisms of Cancer Cell Invasion | Wang, Yi-Ting; Tsai, Chia-feng; Hong, Tzu-Chan; Tsou, Chih-Chiang; Lin, Pei-Yi; Hong, Tse-Ming; Yang, Pan-Chyr; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
| 2008 | Altered Membrane Proteomic Signature in Human Colorectal Cancer Revealed by Label-free Quantitation Strategy | Wu, Chien-Peng; Lin, Pei-Yi; Chien, Chih-Wei; Han, Chia-Li; Tsou, Chih-Chiang; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
| 2011 | An Informatics-assisted Label-free Approach for Personalized Tissue Membrane Proteomics: Case Study on Colorectal Cancer | Han, Chia-Li; Chen, Jinn-Shiun; Chan, Err-Cheng; Wu, Chien-Peng; Yu, Kun-Hsing; Chen, Kuei-Tien; Tsou, Chih-Chiang; Tsai, Chia-Feng; Chien, Chih-Wei; Kuo, Yung-Bin; Lin, Pei-Yi; Yu, Jau-Song; Hsueh, Chuen; Chen, Min-Chi; Chan, Chung-Chuan; Chang, Yu-Sun; Chen, Yu-Ju | MOLECULAR & CELLULAR PROTEOMICS 10,1-15 | | | |
| 2010 | An informatics-assisted label-free quantitation strategy that depicts phosphoproteomic profiles in lung cancer cell invasion | Wang, Yi-Ting; Tsai, Chia-Feng; Hong, Tzu-Chan; Tsou, Chih-Chiang; Lin, Pei-Yi; Pan, Sih-Hua; Hong, Tse-Ming; Yang, Pan-Chyr; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
| 2010 | An Informatics-assisted Label-free Quantitation Strategy that Depicts Phosphoproteomic Profiles in Lung Cancer Cell Invasion | Wang, Yi-Ting; Tsai, Chia-Feng; Hong, Tzu-Chan; Tsou, Chih-Chiang; Lin, Pei-Yi; Pan, Szu-Hua; Hong, Tse-Ming; Yang, Pan-Chyr; Sung, Ting-Yi ; Hsu, Wen-Lian ; Chen, Yu-Ju | JOURNAL OF PROTEOME RESEARCH 9(11), 5582-5597 | | | |
| 2024 | DIA-based phosphoproteomics identifies early phosphorylation events in response to EGTA and mannitol in Arabidopsis | Sang, Tian; Chen, Chin-Wen; Lin, Zhen; Ma, Yu; Du, Yanyan; Lin, Pei-Yi; Hadisurya, Marco; Zhu, Jian-Kang; Lang, Zhaobo; Tao, W. Andy; Hsu, Chuan-Chih ; Wang, Pengcheng | MOLECULAR & CELLULAR PROTEOMICS 23(6), 100804 | | | |
| 2023 | EGFR-T790M Mutation–Derived Interactome Rerouted EGFR Translocation Contributing to Gefitinib Resistance in Non-Small Cell Lung Cancer | Wu, Pei-Shan; Lin, Miao-Hsia; Hsiao, Jye-Chian; Lin, Pei-Yi; Pan, Szu-Hua; Chen, Yu-Ju | Molecular & Cellular Proteomics 22(9), 100624 | | | |
| 2010 | High-speed proteomic signature by informatics-assisted label-free quantitation | Lin, Pei-Yi; Tsai, Chia-Feng; Tsou, Chih-Chiang; Han, Chia-Li; Wang, Yi-Ting; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
| 2008 | High-speed Proteomic Signature by Swift LC-MS/MS and Label-free Quantitation | Lin, Pei-Yi; Tsai, Chia-feng; Tsou, Chih-Chiang; Wu, Chien-Peng; Wang, Yi-Ting; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
| 2008 | IDEAL-Q: An automated tool for high-performance label-free quantitative analysis | Tsou, Chih-Chiang; Tsai, Chia-Feng; Tsui, Ethan Yin-Hao; Yu, Paul Chuan-Yih; Wang, Yi-Ting; Lin, Pei-Yi; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2008 | Immobilized Metal Affinity Chromatography Revisited: pH/acid Control toward High Selectivity in Phosphoproteomics | Tsai, Chia-Feng; Wang, Yi-Ting; Chen, Yet-Ran; Lai, Chen-Yu; Lin, Pei-Yi; Pan, Kuan-Ting; Chen, Jeou-Yuan ; Khoo, Kay-Hooi ; Chen, Yu-Ju | JOURNAL OF PROTEOME RESEARCH 7(9), 4058-4069 | | | |
| 2010 | S-alkylating labeling strategy for site-specific identification of the s-nitrosoproteome | Chen, Yi-Ju; Ku, Wei-Chi; Lin, Pei-Yi; Chou, Hsiao-Chiao; Khoo, Kay-Hooi ; Chen, Yu-Ju | JOURNAL OF PROTEOME RESEARCH 9(12), 6417–6439 | | | |
| 2008 | SEMI-quantitation Strategy for Label-free Quantitative Profiling of Phosphoproteome in Lung Cancer of Different Invasive Potential | Wang, Yi-Ting; Tsai, Chia-Feng; Lin, Pei-Yi; Hong, Tzu-Chan; Tsou, Chih-Chiang; Hsu, Wen-Lian; Sung, Ting-Yi; Hong, Tze Min; Yang, Pan-Chyr; Chen, Yu-Ju | | | | |
| 2024 | TIMAHAC: Streamlined Tandem IMAC-HILIC Workflow for Simultaneous and High-Throughput Plant Phosphoproteomics and N-glycoproteomics | Chen, Chin-Wen; Lin, Pei-Yi; Lai, Ying-Mi; Lin, Miao-Hsia; Lin, Shu-Yu; Hsu, Chuan-Chih | MOLECULAR & CELLULAR PROTEOMICS 23(5), 100762 | | | |
| - | Towards a Comprehensive Phosphoprotoemics View that Depicts the Mechanisms of Cancer Cell Invasion by a Label-free LC-MS/MS Strategy | Wang, Yi-Ting; Tsai, Chia-Feng; Hong, Tzu-Chan; Tsou, Chih-Chiang; Lin, Pei-Yi; Hong, Tse-Ming; Yang, Pan-Chyr; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | Molecular and Cellular Proteomics 11, 71-104 | | | |
