| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2005 | A General Tendency for Conservation of Protein Length across Eukaryotic Kingdoms | Wang, D.; Hsieh, M.; Li, W. H. | Mol Biol Evol 22, 142-147 | | | |
| 2005 | A General tendency for conservation of protein length across eukaryotic kingdoms. | Wang, D.; Hsieh, M.; Li, W. H. | Mol. Biol. Evol. 22(1), 142-147 | | | |
| 2007 | A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection | Hanada, K.; Zhang, X.; Borevitz, J. O.; Li, W. H.; Shiu, S. H. | Genome Research 17(5), 632-640 | | | |
| 2005 | A new measure of the robustness of biochemical networks. | Chen, B-S; Wang, Y-C; Wu, W-S; Li, W. H. | Bioinformatics 21(11), 2698-2705 | | | |
| 2006 | Alternatively and constitutively spliced exons are subject to different evolutionary forces | Chen, F. C.; Wang, S. S.; Chen, C. J.; Li, W. H.; Chuang, T. J. | Mol Biol Evol 23, 675-682 | | | |
| 2002 | Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum | Mu, J.; Duan, J.; Makova, K.; Joy, D. A.; Huynh, C. Q.; Branch, O. H.; Li, W. H.; Su, X. Z. | Nature 418, 323-326 | | | |
| 2006 | Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes | Lin, Y. S.; Byrnes, J. K.; Hwang, J. K.; Li, W. H. | Proceedings of the National Academy of Sciences of the United States of America 103(39), 14412-14416 | | | |
| 2003 | Comment on "Chromosomal Speciation and Molecular Divergence-Accelerated Evolution in Rearranged Chromosomes | Lu, J.; Li, W. H.; Wu, C. I. | Science | | | |
| 2004 | Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. | Shiu, S. -H.; Karlowski, W. M.; Pan, R.; Tzeng, Y. -H.; Mayer, K. F. X.; Li, W. H. | The Plant Cell 16(5), 1220-1234 | | | |
| 2004 | Comparison of three methods for estimating rates of synonymous and non-synonymous nucleotide substitutions | Tzeng, Y-H; Pan, R.; Li, W. H. | Mol. Biol. Evol. 21(12), 2290-2298 | | | |
| 2006 | Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle | Wu, W. S.; Li, W. H.; Chen, B. S. | BMC Bioinformatics 7, 421 | | | |
| 2004 | Developmental constraint on gene duplicability in fruit flies and nematodes | Yang, J.; Li, W. H. | Gene 340(2), 237-240 | | | |
| 2004 | Different age distribution patterns of human, nematode and Arabidopsis duplicate genes. | Zhang, P.; Min, W.; Li, W. H. | Gene . 342(2), 263-268 | | | |
| 2008 | Discovering gapped binding sites of yeast transcription factors | Chen, C. Y.; Tsai, H. K.; Hsu, C. M.; Chen, M. J. May; Hung, H. G.; Huang, G. T.; Li, W. H. | Proceedings of the National Academy of Sciences (USA) 105, 2527-2532 | | | |
| 2008 | Discovering gapped binding sites of yeast transcription factors | Chen, C. Y.; Tsai, H. K.; Hsu, C. M.; Chen, M. J. May; Hung, H. G.; Huang, G. T.; Li, W. H. | Proceedings of the National Academy of Sciences (USA) 105 | | | |
| 2004 | Duplicate genes increase gene expression diversity within and between species | Gu, Z.; Rifkin, S. A.; White, K. P.; Li, W. H. | Nat Genet 36(6), 577-579 | | | |
| 2005 | Dynamic modeling and gene expression prediction for cis regulatory circuits via cross gene-identification | Lin, L. H.; Lee, H. C.; Li, W. H.; Chen, B. S. | BMC Bioinformatics 6, 258 | | | |
| 2008 | Effects of oxygen deficiency on the magnetic ordering of Mn in (TbNa0.1MnO2.9)-Na-0.9 | Yang, C. C.; Wu, C. M.; Li, W. H.; Chan, T. S.; Liu, R. S.; Chen, Y. Y.; Avdeev, M. | JOURNAL OF PHYSICS-CONDENSED MATTER20 | | | |
| 2005 | Evidence from opsin genes rejects nocturnality in ancestral primates | Tan, Y.; Yoder, A. D.; Yamashita, N.; Li, W. H. | Proceedings of the National Academy of Sciences of the United States of America 102(41), 14712-14716 | | | |
| 2009 | Evolution of Olfactory Receptor Genes in East Asian Loaches | Wang, D.; Wang, T. Y.; Weng, L. C.; Emori, Y.; Tzeng, C. S.; Li, W. H. | Zool Stud 48, 223-237. | | | |
