| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2010 | Evolutionary expansion of SPOP and associated TD/POZ gene family: impact of evolutionary route on gene expression pattern. | Choo, KB; Chuang, TJ; Lin, WY; Chang, CM; Tsai, YH; Huang, CJ | Gene 460(1-2), 39-47 | | | |
| 2010 | Gene family size conservation is a good indicator of evolutionary rates. | Chen, FC; Chen, CJ; Li, WH; Chuang, TJ | Molecular biology and evolution 27:1750-1758 | | | |
| 2007 | Human p16 , a novel transcriptional variant of p16INK4A, coexpresses with p16INK4A in cancer cells and inhibits cell-cycle progression | Lin, YC; Diccianni, MB; Kim, Y; Lin, HH; Lee, CH; Lin, RJ; Joo, SH; Li, J; Chuang, TJ; Yang, AS; Kuo, HH; Tsai, MD; Yu, AL | Oncogene 26(49), 7017-7027 | | | |
| 2007 | INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events | Chen, FC; Chen, CJ; Chuang, TJ | Nucleic Acids Research 35(Web Server issue), W633-8 | | | |
| 2007 | Opposite evolutionary effects between different alternative splicing patterns | Chen, FC; Chaw, SM; Tzeng, YH; Wang, SS; Chuang, TJ | Molecular Biology and Evolution 24, 1443-1446 | | | |
| 2007 | PGAA: a plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species EST conservation from seven plant species | Chen, FC; Wang, SS; Chaw, SM; Huang, YT; Chuang, TJ | Plant Physiology 143, 1086-1095 | | | |
| 2016 | Purifying selection shapes the coincident SNP distribution of primate coding sequences. | Chen, CY; Hung, LY; Wu, CS; Chuang, TJ | Scientific reports 6, 27272 | | | |
| 2011 | The Relationships Among MicroRNA Regulation, Intrinsically Disordered Regions, and Other Indicators of Protein Evolutionary Rate. | Chen, SC; Chuang, TJ; Li, WH | Molecular biology and evolution 28(9), 2513-2520 | | | |
