| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2011 | A comparative analysis of DNA methylation across human embryonic stem cell lines. | Chen, PY; Feng, S; Joo, JW; Jacobsen, SE; Pellegrini, M | Genome biology 12(7), R62 | | | |
| 2018 | A piezo-ring-on-chip microfluidic device for simple and low-cost mass spectrometry interfacing. | Tsao, CW; Lei, IC; Chen, PY; Yang, YL | The Analyst 143(4), 981-988 | | | |
| 2018 | A polysaccharide derived from Trichosporon sp. culture strongly primes plant resistance to viruses | Chiu, YS; Chen, PY; Kuan, T; Wang, PC; Chen, YJ; Yang, YL; Yeh, HH | Molecular plant-microbe interactions 31(12), 1257-1270 | | | |
| 2007 | A statistical approach using network structure in the prediction of protein characteristics. | Chen, PY; Deane, CM; Reinert, G | BIOINFORMATICS 23(17), 2314-21 | | | |
| 2015 | An Rtf2 Domain-Containing Protein Influences Pre-mRNA Splicing and Is Essential for Embryonic Development in Arabidopsis thaliana. | Sasaki, T; Kanno, T; Liang, SC; Chen, PY; Liao, WW; Lin, WD; Matzke, AJ; Matzke, M | Genetics 200(2), 523-535 | | | |
| 2018 | Biological control of potato common scab by Bacillus amyloliquefaciens Ba01. | Lin, C; Tsai, CH; Chen, PY; Wu, CY; Chang, YL; Yang, YL; Chen, YL | PloS one 13(4), e0196520 | | | |
| 2010 | BS Seeker: precise mapping for bisulfite sequencing. | Chen, PY; Cokus, SJ; Pellegrini, M | BMC bioinformatics 11, 203 | | | |
| 2009 | c-Myc regulates the coordinated transcription of brain disease-related PDCD10-SERPINI1 bidirectional gene pair. | Chen, PY; Chang, WS; Lai, YK; Wu, CW | MOLECULAR AND CELLULAR NEUROSCIENCE 42(1):23-32 | | | |
| 1994 | Chemical synthesis of gamma-echistatin analogues: elucidation of status of C-terminal (45-49) | Chen, PY; Wu, SH ; Wang, KT | Protein Eng 7, 941-944 | | | |
| 2016 | Clarification of the Antagonistic Effect of the Lipopeptides Produced by Bacillus amyloliquefaciens BPD1 against Pyricularia oryzae via In Situ MALDI-TOF IMS Analysis. | Liao, JH; Chen, PY; Yang, YL; Kan, SC; Hsieh, FC; Liu, YC | Molecules 21(12) | | | |
| 2010 | Conservation and divergence of methylation patterning in plants and animals. | Feng, S; Cokus, SJ; Zhang, X; Chen, PY; Bostick, M; Goll, MG; Hetzel, J; Jain, J; Strauss, SH; Halpern, ME; Ukomadu, C; Sadler, KC; Pradhan, S; Pellegrini, M; Jacobsen, SE | Proceedings of the National Academy of Sciences of the United States of America 107(19), 8689-94 | | | |
| 2010 | Deciphering chemotaxis pathways using cross species comparisons. | Hamer, R; Chen, PY; Armitage, JP; Reinert, G; Deane, CM | BMC systems biology 4, 3 | | | |
| 2014 | Distinct and concurrent pathways of Pol II- and Pol IV-dependent siRNA biogenesis at a repetitive trans-silencer locus in Arabidopsis thaliana. | Sasaki, T; Lee, TF; Liao, WW; Naumann, U; Liao, JL; Eun, C; Huang, YY; Fu, JL; Chen, PY; Meyers, BC; Matzke, AJ; Matzke, M | The Plant journal : for cell and molecular biology 79(1), 127-138 | | | |
| 2016 | Epigenetic changes mediated by polycomb repressive complex 2 and E2a are associated with drug resistance in a mouse model of lymphoma. | Flinders, C; Lam, L; Rubbi, L; Ferrari, R; Fitz-Gibbon, S; Chen, PY; Thompson, M; Christofk, H; Agus, DB; Ruderman, D; Mallick, P; Pellegrini, M | Genome medicine 8(1), 54 | | | |
| 2010 | Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli. | Atsumi, S; Wu, TY; Machado, IM; Huang, WC; Chen, PY; Pellegrini, M; Liao, JC | Molecular systems biology 6, 449 | | | |
| 2018 | Exploration of Fungal Metabolic Interactions Using Imaging Mass Spectrometry on Nanostructured Silicon. | Chen, PY; Hsieh, CY; Shih, CJ; Lin, YJ; Tsao, CW; Yang, YL | Journal of natural products 81(7), 1527-1533 | | | |
| 2006 | Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology. | Lin, CY; Chen, SH; Cho, CS; Chen, CL; Lin, FK; Lin, CH; Chen, PY; Lo, CZ; Hsiung, CA | BMC bioinformatics 7 Suppl 5, S18 | | | |
| 2018 | Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa | Hou, J; Shi, X; Chen, C; Islam, MS; Johnson, AF; Kanno, T; Huettel, B; Yen, MR; Hsu, FM; Ji, T; Chen, PY; Matzke, M; Matzke, AJM; Cheng, J; Birchler, JA | Proceedings of the National Academy of Sciences of the United States of America 115(48), E11321-E11330 | | | |
| 2005 | hp-DPI: Helicobacter pylori database of protein interactomes--embracing experimental and inferred interactions. | Lin, CY; Chen, CL; Cho, CS; Wang, LM; Chang, CM; Chen, PY; Lo, CZ; Hsiung, CA | BIOINFORMATICS 21(7), 1288-90 | | | |
| 2010 | Impact of flood damage on pollutant removal efficiencies of a subtropical urban constructed wetland | Ko, CH; Chang, FC; Lee, TM; Chen, PY; Chen, HH; Hsieh, HL; Guan, CY | Science of The Total Environment 408(20), 4328-4333 | | | |
