| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| - | Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations | Chang, Jia-Ming; Taly, Jean-Francois; Erb, Ionas; Sung, Ting-Yi; Hsu, Wen-Lian ; Tang, Chuan Yi; Notredame, Cedric; Su, Emily Chia-Yu | | | | |
| 2005 | GANA – A Genetic Algorithm for NMR Backbone Resonance Assignment | Lin, Hsin-Nan; Wu, Kuen-Pin; Chang, Jia-Ming; Sung, Ting-Yi; Hsu, Wen-Lian | Nucleic Acids Research 33, 4593-4601 | | | |
| 2005 | HYPROSP II - A knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence | Lin, Hsin-Nan; Chang, Jia-Ming; Wu, Kuen-Pin; Sung, Ting-Yi; Hsu, Wen-Lian | Bioinformatics 21, 3227--3233 | | | |
| 2004 | HYPROSP: A Hybrid Protein Secondary Structure Prediction Algorithm—A Knowledge-Based Approach | Wu, Kuen-Pin; Lin, Hsin-Nan; Chang, Jia-Ming; Sung, Ting-Yi; Hsu, Wen-Lian | Nucleic Acids Research 32, 5059-5065 | | | |
| 2011 | Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words | Lin, Hsin-Nan; Notredame, Cédric; Chang, Jia-Ming; Sung, Ting-Yi; Hsu, Wen-Lian | PLoS ONE 6, e27872 | | | |
| 2012 | Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing | Su, Emily CY; Chang, Jia-Ming; Cheng, Cheng-Wei; Sung, Ting-Yi; Hsu, Wen-Lian | BMC Bioinformatics 13, S13 | | | |
| 2008 | Prediction of Protein Nuclear Localization Based on Smoothed Evolutionary Information and Probabilistic La-tent Semantic Indexing | Su, Emily Chia-Yu; Chang, Jia-Ming; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2009 | Prediction of Protein Nuclear Localization Based on Smoothed Evolutionary Information and Probabilistic Latent Semantic Indexing | Su, Emily Chia-Yu; Chang, Jia-Ming; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
| 2008 | PSLDoc: protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis | Chang, Jia-Ming; Su, Emily Chia-Yu; Lo, Allan; Chiu, Hua-Sheng; Sung, Ting-Yi; Hsu, Wen-Lian | PROTEINS: Structure, Function, and Bioinformatics 72, 693-710 | | | |
