Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
2010 | High-speed proteomic signature by informatics-assisted label-free quantitation | Lin, Pei-Yi; Tsai, Chia-Feng; Tsou, Chih-Chiang; Han, Chia-Li; Wang, Yi-Ting; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
2008 | High-speed Proteomic Signature by Swift LC-MS/MS and Label-free Quantitation | Lin, Pei-Yi; Tsai, Chia-feng; Tsou, Chih-Chiang; Wu, Chien-Peng; Wang, Yi-Ting; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | | | | |
2008 | IDEAL-Q: An automated tool for high-performance label-free quantitative analysis | Tsou, Chih-Chiang; Tsai, Chia-Feng; Tsui, Ethan Yin-Hao; Yu, Paul Chuan-Yih; Wang, Yi-Ting; Lin, Pei-Yi; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
2010 | IDEAL-Q: An automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation | Tsou, Chih-Chiang; Tsai, Chia-Feng; Tsui, Ying-Hao; Sudhir, Putty-Reddy; Wang, Yi-Ting; Chen, Yu-Ju ; Chen, Jeou-Yuan ; Sung, Ting-Yi ; Hsu, Wen-Lian | Molecular and Cellular Proteomics 9(1), 131-144 | | | |
2008 | Immobilized Metal Affinity Chromatography Revisited: pH/acid Control toward High Selectivity in Phosphoproteomics | Tsai, Chia-Feng; Wang, Yi-Ting; Chen, Yet-Ran; Lai, Chen-Yu; Lin, Pei-Yi; Pan, Kuan-Ting; Chen, Jeou-Yuan ; Khoo, Kay-Hooi ; Chen, Yu-Ju | JOURNAL OF PROTEOME RESEARCH 7(9), 4058-4069 | | | |
2011 | Improving phosphorylation site assignment by statistical analysis | Lu, Sheng-Chieh; Tsai, Chia-Feng; Tsou, Chih-Chiang; Yang, Han-Yin; Chen, Lien-Chin; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
2010 | Improving phosphorylation site assignment by statistical analysis on CID fragmentation | Lu, Sheng-Chieh; Tsai, Chia-Feng; Tsou, Chih-Chiang; Yang, Han-Yin; Chen, Lien-Chin; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
2010 | Improving phosphorylation site assignment by statistical analysis on CID fragmentation | Lu, Sheng-Shieh; Tsai, Chia-Feng; Tsou, Chih-Chiang; Yang, Han-Ying; Chen, Lien-Chin; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
2018 | Inducing hair follicle neogenesis with secreted proteins enriched in embryonic skin | Fan, Sabrina Mai-Yi; Tsai, Chia-Feng; Yen, Chien-Mei; Lin, Miao-Hsia; Wang, Wei-Hung; Chan, Chih-Chieh; Chen, Chih-Lung; Phua, Kyle K.L.; Pan, Szu-Hua; Plikus, Maksim V.; Yu, Sung-Liang; Chen, Yu-Ju ; Lin, Sung-Jan | Biomaterials 167, 121-131 | | | |
2011 | Nanoprobe-based Immobilized Metal Affinity Chromatography for Sensitive and Complementary Enrichment of Multiply Phosphorylated Peptides | Wu, Huan-Ting; Hsu, Chuan-Chih; Tsai, Chia-Feng; Lin, Po-Chiao; Lin, Chun-Cheng; Chen, Yu-Ju | PROTEOMICS 13,11, 2639-2653 | | | |
2013 | ProtDIA-id: An automatic tool to extract MS/MS spectra for protein identification in proteomic experiments using data-independent acquisition | Chang, Hui-Yin; Chiang, Nai-Yuan; Tsai, Chia-Feng; Tsai, Ya-Wen; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | | | | |
2008 | SEMI-quantitation Strategy for Label-free Quantitative Profiling of Phosphoproteome in Lung Cancer of Different Invasive Potential | Wang, Yi-Ting; Tsai, Chia-Feng; Lin, Pei-Yi; Hong, Tzu-Chan; Tsou, Chih-Chiang; Hsu, Wen-Lian; Sung, Ting-Yi; Hong, Tze Min; Yang, Pan-Chyr; Chen, Yu-Ju | | | | |
2013 | Spectrum-based method to generate good decoy libraries for spectral library searching in peptide identifications | Cheng, Chia-Ying; Tsai, Chia-Feng; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian | Journal of Proteome Research 12, 2305-2310 | | | |
2021 | Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics | Tsai, Chia-Feng; Zhang, Pengfei; Scholten, David; Martin, Kendall; Wang, Yi-Ting; Zhao, Rui; Chrisler, William B.; Patel, Dhwani B.; Dou, Maowei; Jia, Yuzhi; Reduzzi, Carolina; Liu, Xia; Moore, Ronald J.; Burnum-Johnson, Kristin E.; Lin, Miao-Hsia; Hsu, Chuan-Chih ; Jacobs, Jon M.; Kagan, Jacob; Srivastava, Sudhir; Rodland, Karin D.; Steven, Wiley H.; Qian, Wei-Jun; Smith, Richard D.; Zhu, Ying; Cristofanilli, Massimo; Liu, Tao; Liu, Huiping; Shi, Tujin | Communications Biology 4, 265 | | | |
- | Towards a Comprehensive Phosphoprotoemics View that Depicts the Mechanisms of Cancer Cell Invasion by a Label-free LC-MS/MS Strategy | Wang, Yi-Ting; Tsai, Chia-Feng; Hong, Tzu-Chan; Tsou, Chih-Chiang; Lin, Pei-Yi; Hong, Tse-Ming; Yang, Pan-Chyr; Sung, Ting-Yi; Hsu, Wen-Lian; Chen, Yu-Ju | Molecular and Cellular Proteomics 11, 71-104 | | | |