| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2011 | A comparative analysis of DNA methylation across human embryonic stem cell lines. | Chen, PY; Feng, S; Joo, JW; Jacobsen, SE; Pellegrini, M | Genome biology 12(7), R62 | | | |
| 2010 | BS Seeker: precise mapping for bisulfite sequencing. | Chen, PY; Cokus, SJ; Pellegrini, M | BMC bioinformatics 11, 203 | | | |
| 2013 | BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data. | Guo, W; Fiziev, P; Yan, W; Cokus, S; Sun, X; Zhang, MQ; Chen, PY ; Pellegrini, M | BMC genomics 14, 774 | | | |
| 2021 | Comparative analysis of embryo proper and suspensor transcriptomes in plant embryos with different morphologies | Chen, M; Lin, JY ; Wu, X; Apuya, NR; Henry, KF; Le, B; Bui, AQ; Pelletier, JM; Cokus, S; Pellegrini, M; Harada, JJ; Goldberg, RB | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 118(6), e2024704118 | | | |
| 2010 | Conservation and divergence of methylation patterning in plants and animals. | Feng, S; Cokus, SJ; Zhang, X; Chen, PY; Bostick, M; Goll, MG; Hetzel, J; Jain, J; Strauss, SH; Halpern, ME; Ukomadu, C; Sadler, KC; Pradhan, S; Pellegrini, M; Jacobsen, SE | Proceedings of the National Academy of Sciences of the United States of America 107(19), 8689-94 | | | |
| 2016 | Epigenetic changes mediated by polycomb repressive complex 2 and E2a are associated with drug resistance in a mouse model of lymphoma. | Flinders, C; Lam, L; Rubbi, L; Ferrari, R; Fitz-Gibbon, S; Chen, PY; Thompson, M; Christofk, H; Agus, DB; Ruderman, D; Mallick, P; Pellegrini, M | Genome medicine 8(1), 54 | | | |
| 2010 | Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli. | Atsumi, S; Wu, TY; Machado, IM; Huang, WC; Chen, PY; Pellegrini, M; Liao, JC | Molecular systems biology 6, 449 | | | |
| - | Intra-uterine calorie restriction affects placental DNA methylation | Chen, PY; Ganguly, A; Rubbi, L; Orozco, LD; Morselli, M; Ashraf, D; Jaroszewicz, A; Feng, S; Jacobsen, SE; Nakano, A; Devaskar, SU; Pellegrini, M | | | | |
| 2018 | Prenatal Growth Patterns and Birthweight Are Associated With Differential DNA Methylation and Gene Expression of Cardiometabolic Risk Genes in Human Placentas: A Discovery-Based Approach. | Chen, PY; Chu, A; Liao, WW; Rubbi, L; Janzen, C; Hsu, FM; Thamotharan, S; Ganguly, A; Lam, L; Montoya, D; Pellegrini, M; Devaskar, SU | Reproductive sciences (Thousand Oaks, Calif.) 25(4), 523-539 | | | |
| 2010 | Relationship between nucleosome positioning and DNA methylation. | Chodavarapu, RK; Feng, S; Bernatavichute, YV; Chen, PY; Stroud, H; Yu, Y; Hetzel, JA; Kuo, F; Kim, J; Cokus, SJ; Casero, D; Bernal, M; Huijser, P; Clark, AT; Kramer, U; Merchant, SS; Zhang, X; Jacobsen, SE; Pellegrini, M | Nature 466(7304), 388-92 | | | |
| 2017 | Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development. | Lin, JY ; Le, BH; Chen, M; Henry, KF; Hur, J; Hsieh, TF; Chen, PY ; Pelletier, JM; Pellegrini, M; Fischer, RL; Harada, JJ; Goldberg, RB | Proceedings of the National Academy of Sciences of the United States of America 114(45), E9730-E9739 | | | |
| 2013 | Stage-Specific Roles for Tet1 and Tet2 in DNA Demethylation in Primordial Germ | Vincent, JJ; Huang, Y; Chen, PY; Feng, S; Calvopiña, JH; Nee, K; Lee, SA; Le, T; Yoon, AJ; Faull, K; Fan, G; Rao, A; Jacobsen, SE; Pellegrini, M; Clark, AT | Cell Stem Cell | | | |
| 2014 | The effects of perinatal testosterone exposure on the DNA methylome of the mouse brain are late-emerging. | Ghahramani, NM; Ngun, TC; Chen, PY ; Tian, Y; Krishnan, S; Muir, S; Rubbi, L; Arnold, AP; de Vries, GJ; Forger, NG; Pellegrini, M; Vilain, E | Biology of sex differences 5, 8 | | | |
