| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2002 | Signatures of domain shuffling in the human genome | Kaessmann, H.; Zöllner, S.; Nekrutenko, A.; Li, W. -H. | Genome Res. 12: 1642-1650. | | | |
| 2002 | Slow molecular clocks in Old World monkeys, apes and humans. | Yi, S.; Ellsworth, D. L.; Li, W. -H. | Mol. Biol. Evol. 19, 2191-2198 | | | |
| 1991 | Statistical methods for testing molecular phylogenies | Li, W. -H.; Gouy, M. | Phylogenetic Analysis of DNA Sequences (Oxford Press) | | | |
| 1990 | Statistical tests of molecular phylogenies | Li, W. -H.; Gouy, M. | Methods of Enzymology (Academic Press) | | | |
| 1992 | Structure and Evolution of the Apolipoprotein and Lipase Gene Families | Chan, L.; Hide, W. A.; Yang, Y. -W.; Li, W. -H. | Cellular and Molecular Biology of Atherosclerosis | | | |
| 2007 | Superconductivity in zero-dimensional indium nanoparticles | Wu, F. -Y.; Yang, C. C.; Wu, C. -M.; Wang, C. -W.; Li, W. -H. | J. Appl. Phys.101, 09G111 | | | |
| 2002 | The influence of adjacent nucleotides on the pattern of nucleotide substitution in mitochondrial introns of angiosperms. | Yang, Y. -W.; Chen, Y.; Li, W. -H. | J. Mol. Evol. 55:111-15. | | | |
| 2001 | The KA/KS ratio test for assessing the protein-coding potential of genomic regions: An empirical and simulation study | Nekrutenko, A.; Makova, K. D.; Li, W. -H. | Genome Res. 12:198-202. | | | |
| 2007 | The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes | Hanada, K.; Shiu, S. -H.; Li, W. -H. | Mol. Biol. Evol. 24(10), 2235-2241 | | | |
| 2001 | Transposable elements are found in a large number of human protein coding regions | Nekrutenko, A.; Li, W. -H. | Trends in Genetics 17:619-621 | | | |
| 2009 | Uncovering small RNA-mediated responses to phosphate-deficiency in Arabidopsis by deep sequencing | Hsieh, L. -C.; Lin, S. -I; Shih, A C. -C.; Chen, J. -W.; Lin, W. -Y.; Tseng, C. -Y.; Li, W. -H.; Chiou, T. -J. | | | | |
| 1999 | Use of phylogenetic inference to test an HIV transmission hypothesis | Krushkal, J.; Li, W. -H. | The Evolution of HIV (Baltimore, MD : The Johns Hopkins University Press) | | | |
