| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 1998 | Dating the age of the last common ancestor of all living organisms with a protein clock | Adkins, R. M.; Li, W. -H. | Horizontal Gene Transfer (New York : Chapman & Hall) | | | |
| 2002 | Detection of Gene Duplications and Block Duplications in Eukaryotic Genomes | Li, W. -H.; Gu, Z.; Cavalcanti, A. R. O.; Nekrutenko, A. | J. Structural Functional Genomics | | | |
| 2012 | Development of cellulosic ethanol production process vis co-culturing of artificial cellulosomal Bacillus and kefir yeast. | Ho, C-Y.; Chang, J. -J.; Lee, S. -C.; Chin, T-. Y.; Shih, M. -C.; Li, W. -H.; Huang, C. -C. | Applied Energy 100, 27-32 | | | |
| 2003 | Different Evolutionary Patterns between Young Duplicate Genes in the Human Genome. | Zhang, P.; Gu, Z.; Li, W. -H. | Genome Biology 4, R56 | | | |
| 2008 | Discovering gapped binding sites of yeast transcription factors | Chen, CY; Tsai, HK; Hsu, CM; Chen, MJ; Hung, HG; Huang, GT; Li, W. -H. | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(7), 2527-2532 | | | |
| 2003 | Divergence in the spatial pattern of gene expression between human duplicate genes. | Makova, K. D.; Li, W. -H. | Genome Res. 13(7), 1638-1645 | | | |
| 2002 | DNA Polymorphism in a world-wide sample of human X chromosomes. | Yu, N.; Fu, Y. -X.; Li, W. -H. | Mol. Biol. Evol. 19, 2131-2141 | | | |
| 1992 | DNA variation in humans and its implications for human evolution | Li, W. -H.; Sadler, A. | Oxford Surveys in Evolutionary Biology (New York : Oxford University Press) | | | |
| 2003 | Effects of GC content and mutational pressure on the lengths of exons and coding sequences | Xia, X.; Xie, Z.; Li, W. -H. | J. Mol. Evol. 56(3), 362-370 | | | |
| 2001 | Episodic evolution of growth hormone in primates and emergence of the species specificity of human growth hormone receptor | Liu, J. -C.; Makova, K.; Adkins, R. M.; Gibson, S.; Li, W. -H. | Mol. Biol. Evol. 18, 945-953 | | | |
| 1994 | Estimation of population parameters and detection of natural selection from DNA sequences | Li, W. -H.; Fu, Y. -X. | Non-Neutral Evolution: Theories and Molecular Data (New York : Chapman & Hall) | | | |
| 2003 | ETOPE: Evolutionary Test of Predicted Exons | Nekrutenko, A.; Chung, W. -Y.; Li, W. -H. | Nucleic Acid Res | | | |
| 1985 | Evolution of DNA sequences | Li, W. -H.; Luo, C. -C.; Wu, C. -I | Molecular Evolutionary Genetics (New York : Plenum) | | | |
| 1983 | Evolution of duplicate genes and pseudogenes | Li, W. -H. | Evolution of Genes and Proteins (Sinauer Associates : Sunderland, Massachusetts) | | | |
| 1982 | Evolutionary change of duplicate genes | Li, W. -H. | Isozomes: Current Topics in Medical and Biological Research (New York : Alan R. Liss, Inc.) | | | |
| 2005 | Evolutionary diversification of DNA methyltransferases in eukaryotic genomes. | Ponger, L.; Li, W. -H. | Mol. Biol. Evol. 22(4), 1119-1128 | | | |
| 1999 | Evolutionary genetics of primate color vision: recent progress and potential limits to knowledge | Li, W. -H.; Boissinot, S.; Tan, Y.; Shyue, S. -K.; Hewett-Emmett, D. | Evol. Biol. (Springer US) | | | |
| 1990 | Evolutionary relationships among primary lineages of life inferred from ribosomal RNA sequences. | Gouy, M.; Li, W. -H. | The Ribosome: Structure, Function, and Evolution (Washington, D.C. : American Society for Microbiology) | | | |
| 2002 | Extent of gene duplication in the genomes of Drosophila, nematode, and yeast. | Gu, Z.; Cavalcanti, A.; Chen, F. -C.; Bouman, P.; Li, W. -H. | Mol. Biol. Evol. 19, 256-262 | | | |
| 2007 | Features and trend of loss of promoter-associated CpG islands in the human and mouse Genomes | Jiang, C.; Han, L.; Su, B.; Li, W. -H.; Zhao, Z. | Mol. Biol. Evol. 24(9), 1991-2000 | | | |
