| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2009 | IDEAL-Q: An automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation | Chih-Chiang Tsou; Chia-Feng Tasi; Ying-Hao Tsui; Putty-Reddy Sudhir; Yi-Ting Wang; Yu-Ju Chen; Jeou-Yuan Chen; Ting-Yi Sung; Wen-Lian Hsu | IM-IIS-09-001 | | | |
| 2012 | Label-free quantitative proteomics and N-glycoproteomics analysis of KRAS-activated human bronchial epithelial cells | Putty-Reddy Sudhir; Chein-Hung Chen; Madireddy Pavana Kumari; Mei-Jung Wang; Chih-Chiang Tsou; Ting-Yi Sung; Jeou-Yuan Chen; Chung-Hsuan Chen | Molecular and Cellular Proteomics 11(10), 901-915 | | | |
| 2015 | Large-Scale Determination of Absolute Phosphorylation Stoichiometries in Human Cells by Motif-Targeting Quantitative Proteomics | Chia-Feng Tsai; Yi-Ting Wang; Hsin-Yung Yen; Chih-Chiang Tsou; Wei-Chi Ku; Pei-Yi Lin; Hsuan-Yu Chen ; Alexey Nesvizhskii; Yasushi Ishihama; Chen, Yu-Ju | NATURE COMMUNICATIONS 6, 6622 | | | |
| 2008 | MaXIC-Q: A Fully Automated Generic Tool Using Statistical and Computational Methods for Protein Quantitation Based on Stable Isotope Labeling and LC-MS | Ethan Yin-Hao Tsui; Yi-Hwa Yian; Chih-Chiang Tsou; Paul Chuan-Yih Yu; Yi-Ju Chen; Ke-Shiuan Lynn; Wen-Chi Chou; Yu-Ju Chen; Ting-Yi Sung; Wen-Lian Hsu | TR-IIS-08-004 | | | |
| 2015 | Mining Missing Membrane Proteins by High-pH Reverse Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry | Kitata, Reta Birhanu; Dimayacyac-Esleta, Baby Rorielyn; Choong, Wai-Kok; Chia-Feng Tsai; Tai-Du Lin; Chih-Chiang Tsou; Shao-Hsing Weng; Yi-Ju Chen; Pan-Chyr Yang; Arco, Susan; Nesvizhskii, Alexey; Ting-Yi Sung ; Yu-Ju Chen | Journal of Proteome Research 14(9), 3658-3669 | | | |
| 2016 | Untargeted, Spectral Library-Free Analysis of Data Independent Acquisition Proteomics Data Generated Using Orbitrap Mass Spectrometers | Chih-Chiang Tsou; Chia-Feng Tsai; Guoci Teo; Yu-Ju Chen ; Alexey I. Nesvizhskii | PROTEOMICS 16(15-16), 2257-2271 | | | |
