| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2015 | Large-Scale Determination of Absolute Phosphorylation Stoichiometries in Human Cells by Motif-Targeting Quantitative Proteomics | Chia-Feng Tsai; Yi-Ting Wang; Hsin-Yung Yen; Chih-Chiang Tsou; Wei-Chi Ku; Pei-Yi Lin; Hsuan-Yu Chen ; Alexey Nesvizhskii; Yasushi Ishihama; Chen, Yu-Ju | NATURE COMMUNICATIONS 6, 6622 | | | |
| 2018 | Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function | Paik, Young-Ki; Lane, Lydie; Kawamura, Takeshi; Chen, Yu-Ju ; Cho, Je-Yoel; LaBaer, Joshua; Yoo, Jong Shin; Domont, Gilberto; Corrales, Fernando; Omenn, Gilbert S.; Archakov, Alexander; Encarnación-Guevara, Sergio; Lui, Siqi; Salekdeh, Ghasem Hosseini; Cho, Jin-Young; Kim, Chae-Yeon; Overall, Christopher M. | Journal of Proteome Research 17(12), 4042-4050 | | | |
| 2022 | Ligand-assisted imprinting-probe-labeling strategy reveals Siglec-7 - glycoprotein interactions | Li, Pei‐Jhen; Kawade, Sachin Kisan; Adak, Avijit K.; Shen, Yu‐Ju; Fan, Chen‐Yo; Hsieh, Yu‐Heng; Angata, Takashi ; Chen, Yu‐Ju ; Lin, Chun‐Cheng | Journal of the Chinese Chemical Society 69(8), 1326-1337 | | | |
| 2015 | MAGIC: An Automated N-Linked Glycoprotein Identification Tool Using a Y1-Ion Pattern Matching Algorithm and in Silico MS2 Approach | Ke-Shiuan Lynn; Chen-Chun Chen; T. Mamie Lih; Cheng-Wei Cheng; Wan-Chih Su; Chun-Hao Chang; Chia-Ying Cheng; Wen-Lian Hsu ; Yu-Ju Chen ; Ting-Yi Sung | Analytical Chemistry 87(4), 2466-2473 | | | |
| 2003 | Mass Spectrometry – Based Proteomics | Chen, Yu-Ju ; Liao, Hsin-Kai | CHEMISTRY 61,235-247 | | | |
| 2009 | MaXIC-Q Web: A Fully Automated Web Service Using Statistical and Computational Methods for Protein Quantitation Based on Stable Isotope Labeling and LC-MS | Tsou, Chih-Chiang; Tsui, Yin-Hao; Yian, Yi-Hwa; Chen, Yi-Ju; Yang, Han-Yin; Yu, Chuan-Yih; Lynn, Ke-Shiuan; Chen, Yu-Ju ; Sung, Ting-Yi ; Hsu, Wen-Lian | Nucleic Acids Research 37(suppl_2), W661-W669 | | | |
| 2003 | Mechanistic aspect of Co(HAPP)(TFA)2 in DNA bulge-specific recognition. | Cheng, Chien-Chung; Huang-Fu, Wei-Chun; Hung, Kuo-Chan; Chen, Po-Jui; Wang, Wen-Jwu; Chen, Yu-Ju | NUCLEIC ACIDS RESEARCH 31, 2227-2233 | | | |
| 2022 | Membrane proteomic profiling enhances drug target detection | Chan, Hsin‐Ju; Chen, Li‐Yu; Chiu, Huan‐Chi; Chen, Yu‐Ju | Journal of the Chinese Chemical Society 69(8), 1338-1345 | | | |
| 2013 | Methods for Detection and Characterization of Protein S-nitrosylation | Chen, Yi-Ju; Ching, Wei-Chieh; Lin, Yu-Pei; Chen, Yu-Ju | Methods 62(2), p.138-150 | | | |
| 2015 | Mining Missing Membrane Proteins by High-pH Reverse Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry | Kitata, Reta Birhanu; Dimayacyac-Esleta, Baby Rorielyn; Choong, Wai-Kok; Chia-Feng Tsai; Tai-Du Lin; Chih-Chiang Tsou; Shao-Hsing Weng; Yi-Ju Chen; Pan-Chyr Yang; Arco, Susan; Nesvizhskii, Alexey; Ting-Yi Sung ; Yu-Ju Chen | Journal of Proteome Research 14(9), 3658-3669 | | | |
| 2022 | Molecular basis and role of Siglec-7 ligand expression on chronic lymphocytic leukemia B cells | Chang, L.-Y.; Liang, S.-Y.; Lu, S.-C.; Tseng, H.-C.; Tsai, H.-Y.; Tang, C.-J.; Sugata, M.; Chen, Y.-J.; Chen, Y. -J. ; Wu, S.-J.; Lin, K.-I ; Khoo, K.-H. ; Angata, T. | Frontiers in Immunology 13, 840388 | | | |
| 2005 | Molecular Identification of Canine Podocalyxin-like Protein 1 as a Renal Tubulogenic Regulator | Cheng, Hsin-Yuan; Lin, Yu-Yu; Yu, Chun-Ying; Chen, Jen-Yau; Shen, Kuo-Fang; Lin, Wei-Ling; Liao, Hsin-Kai; Chen, Yu-Ju ; Liu, Chen-Hsuan; Pang, Victor Fei; Jou, Tzuu-Shuh | JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY 16, 1612-1622 | | | |
| 2015 | Monodispersity of Magnetic Immuno-Nanoprobes Enhances the Detection Sensitivity of Low Abundance Biomarkers in One Drop of Serum | Rey Y. Capangpangan; Mira Anne C. dela Rosa; Rofeamor P. Obena; Yu-Jen Chou; Der-Lii Tzou ; Shao-Ju Shih; Ming-Hsi Chiang ; Chun-Cheng Lin; Yu-Ju Chen | ANALYST 140, 7678-7686 | | | |
| 2006 | Multi-Q: a fully automated tool for multiplexed protein quantitation | Lin, WT; Hung, WN; Yian, YH; Wu, KP; Han, CL; Chen, YR ; Chen, YJ ; Sung, TY; Hsu, WL | Journal of proteome research 5(9), 2328-2338 | | | |
| 2008 | Multiplexed Immunoassay: Quantitation and Profiling of Serum Biomarkers Using Magnetic Nanoprobes and MALDI-TOF MS | Wang, Kai-Yi; Chuang, Szu-An; Lin, Po-Chiao; Huang, Li-Shing; Chen, Shu-Hua; Ouarda, Saib; Pan, Wen-Harn ; Lee, Ping-Ying; Lin, Chun-Cheng; Chen, Yu-Ju | Analytical chemistry 80(16), 6159-6167 | | | |
| 2007 | Nanomaterial Based Affinity Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry for Biomolecules and Pathogenic Bacteria | Chiu, Tai-Chia; Huang, Li-Shing; Lin, Po-Chiao; Chen, Yu-Chie; Chen, Yu-Ju ; Lin, Chun-Cheng; Chang, Huan-Tsung | Recent Patents on Nanotechnology 1, 99-111 | | | |
| 2019 | Nanomatrix-Assisted Laser Desorption-Ionization Mass Spectrometry for Oligosaccharides Profiling | Elias Gizaw Mernie; Leta Deressa Tolesa; Ming-Jer Lee; Mei-Chun Tseng ; Yu-Ju Chen | | | | |
| 2011 | Nanoparticle-assisted MALDI-TOF MS combined with Seed-Layer Surface Preparation for Quantification of Small Molecules | Ho, Yi-Chi; Tseng, Mei-Chun ; Lu, Ying-Wei; Lin, Chun-Cheng; Chen, Yu-Ju ; Fuh, Ming-Ren | ANALYTICA CHIMICA ACTA 697, 1-7 | | | |
| 2007 | Nanoprobe-Based Affinity Mass Spectrometry for Cancer Marker Protein Profiling | Huang, Li-Shing; Chien, Yuh-Yih; Chen, Shu-Hua; Lin, Po-Chiao; Wang, Kai-Yi; Chou, Po-Hung; Lin, Chun-Cheng; Chen, Yu-Ju | Nanomaterials for Cancer Diagnosis. (U.S.A : Wiley-VCH) | | | |
| 2005 | Nanoprobe-Based Affinity Mass Spectrometry for Selected Protein Profiling in Human Plasma | Chou, Po-Hung; Chen, Shu-Hua; Liao, Hsin-Kai; Lin, Po-Chiao; Her, Gour-Rong; Lai, Alan Chuan-Ying; Chen, Jenn-Han; Lin, Chun-Cheng; Chen, Yu-Ju | ANALYTICAL CHEMISTRY 77, 5990-5997 | | | |
