| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2009 | Fabrication of Oriented Antibody-Conjugated Magnetic Nanoprobes and Their Immunoaffinity Application | Lin, Po-Chiao; Chen, Shu-Hua; Wang, Kai-Yi; Chen, Mu-Lin; Adak, Avijit Kumar; Hwu, Jih-Ru R.; Chen, Yu-Ju ; Lin, Chun-Cheng | ANALYTICAL CHEMISTRY 81 (21), 8774–8782 | | | |
| 2019 | Fluorescence “Turn-on” Lectin Sensors Fabricated by Ligand-Assisted Labeling Probes for Detecting Protein–Glycoprotein Interactions | Li, Pei-Jhen; Anwar, Mohammad Tarigue; Fan, Chen-Yo; Juang, Duane S.; Lin, Hsin-Yi; Chang, Tsung-Che; Kawade, Sachin Kisan; Chen, Hsiang-Jung; Chen, Yu-Ju ; Tan, Kui-Thong; Lin, Chun-Cheng | Biomacromolecules 21(2), 815-824 | | | |
| 2016 | Functionalized HgTe Nanoparticles Promote Laser-Induced Solid Phase Ionization/Dissociation for Comprehensive Glycan Sequencing | Indah Primadona; Yin-Hung Lai; Rey Y. Capangpangan; Rofeamor P. Obena; Mei-Chun Tseng; Ming-Feng Huang; Huan-Tsung Chang; Shiou-Ting Li; Chung-Yi Wu ; Wei-Ting Chien; Chun-Cheng Lin; Yi-Sheng Wang; Yu-Ju Chen | ANALYST 141(21), 6093-6103 | | | |
| 2007 | Functionalized Magnetic Nanoparticles for Small-Molecule Isolation, Identification, and Quantification | Lin, Po-Chiao; Tseng, Mei-Chun ; Su, An-Kai; Lin, Chun-Cheng; Chen, Yu-Ju | Analytical Chemistry 79(9), 3401-3408 | | | |
| 2008 | Globotriose-Functionalized Gold Nanoparticles as Multivalent Probes for Shiga-like Toxin | Chien, Yuh-Yih; Jan, Mi-Dan; Adak, Avijit Kumar; Tzeng, Hsiao-Chien; Lin, Yen-Ping; Chen, Yu-Ju ; Wang, Ken-Tseng; Chen, Chien-Tien; Chen, Chia-Chun; Lin, Chun-Cheng | CHEMBIOCHEM 9, 1100-1109 | | | |
| 2015 | Glutathionylspermidine in the Modification of Protein SH Groups: The Enzymology and Its Application to Study Protein Glutathionylation | Jason Ching-Yao Lin; Bing-Yu Chiang; Chi-Chi Chou; Tzu-Chieh Chen; Yi-Ju Chen; Yu-Ju Chen ; Chun-Hung Lin | Molecules 20(1), 1452-1474 | | | |
| 2018 | Glycoproteomic Alterations in Drug-Resistant Nonsmall Cell Lung Cancer Cells Revealed by Lectin Magnetic Nanoprobe-Based Mass Spectrometry | Waniwan, Juanilita T.; Chen, Yi-Ju; Capangpangan, Rey; Weng, Shao-Hsing; Chen, Yu-Ju | Journal of Proteome Research 17(11), 3761-3773 | | | |
| 2015 | GSHSite: Exploiting An Iteratively Statistical Method to Identify S-Glutathionylation Sites with Substrate Specificity | Yi-Ju Chen; Cheng-Tsung Lu; Kai-Yao Huang; Hsin-Yi Wu; Chen, Yu-Ju ; Tzong-Yi Lee | PLoS One 10(4):e0118752. doi: 10.1371/journal.pone.0118752 | | | |
| 2010 | IDEAL-Q: An automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation | Tsou, Chih-Chiang; Tsai, Chia-Feng; Tsui, Ying-Hao; Sudhir, Putty-Reddy; Wang, Yi-Ting; Chen, Yu-Ju ; Chen, Jeou-Yuan ; Sung, Ting-Yi ; Hsu, Wen-Lian | Molecular and Cellular Proteomics 9(1), 131-144 | | | |
| 2020 | Identification of Conomarphin Variants in the Conus eburneus Venom and the Effect of Sequence and PTM Variations on Conomarphin Conformations | Itang, Corazon Ericka Mae M.; Gaza, Jokent T.; Masacupan, Dan Jethro M.; Batoctoy, Dessa Camille R.; Chen, Yu-Ju ; Nellas, Ricky B.; Yu, Eizadora T. | Marine Drugs 18(10), 503 | | | |
| 2010 | Identification of in vivo phosphorylation sites of lens proteins from porcine eye lenses by a gel-free phosphoproteomics approach | Chiou, SH ; Huang, CH; Lee, IL; Wang, YT; Liu, NY; Tsay, YG; Chen, YJ | MOLECULAR VISION 16, 294-302 | | | |
| 2017 | Identification of Potential Plasma Biomarkers for Nonalcoholic Fatty Liver Disease by Integrating Transcriptomics and Proteomics in Laying Hens | Meng-Tsz Tsai; Yu-Jen Chen; Ching-Yi Chen; Mong-Hsun Tsai; Chia-Li Han; Yu-Ju Chen ; Harry J Mersmann; Shih-Torng Ding | The Journal of Nutrition 147(3), 293-303 | | | |
| 2011 | Identification of SEC61 Beta and Its Autoantibody As Biomarkers for Colorectal Cancer | Fan, Chung-Wei; Chan, Chung-Chuan; Chen, Kuei-Tien; Twu, Jen; Huang, Ya-Shu; Han, Chia-Li; Chen, Yu-Ju ; Yu, Jau-Song; Chang, Yu-Sun; Kuo, Yung-Bin; Chan, Err-Cheng | CLINICA CHIMICA ACTA 412 (11-12), 887–893 | | | |
| 2004 | Identification of Tumor-associated Plasma Biomarkers Using Proteomic Techniques: From Mouse to Human | Juan, Hsueh-Fen; Chen, Jenn-Han; Hsu, Wei-Tse; Huang, Su-Ching; Chen, Shui-Tein; Lin, John Yi-Chung; Chang, Yu-Wang; Chiang, Chih-Yin; Wen, Li-Li; Chan, De-Chuan; Liu, Yao-Chi; Chen, Yu-Ju | PROTEOMICS 4, 2766-2775 | | | |
| 2008 | Immobilized Metal Affinity Chromatography Revisited: pH/acid Control toward High Selectivity in Phosphoproteomics | Tsai, Chia-Feng; Wang, Yi-Ting; Chen, Yet-Ran; Lai, Chen-Yu; Lin, Pei-Yi; Pan, Kuan-Ting; Chen, Jeou-Yuan ; Khoo, Kay-Hooi ; Chen, Yu-Ju | JOURNAL OF PROTEOME RESEARCH 7(9), 4058-4069 | | | |
| 2006 | Improved Analysis of Membrane Protein by PVDF-Aided, Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry | Chang, Chih-Yang; Liao, Hsin-Kai; Juo, Chiun-Gung; Chen, Shu-Hua; Chen, Yu-Ju | ANALYTICA CHIMICA ACTA 556,237-246 | | | |
| 2011 | In-depth identification of pathways related to cisplatin-induced hepatotoxicity through an integrative method based on an informatics-assisted label-free protein quantitation and microarray gene expression approach | Cho, Young-Eun; Singh, Thoudam S. K.; Lee, Hyun-Chul; Moon, Pyong-Gon; Lee, Jeong-Eun; Lee, Myung-Hoon; Choi, Eung-Chil; Chen, Yu-Ju ; Kim, Sang-Hyun; Baek, Moon-Chang | MOLECULAR & CELLULAR PROTEOMICS 10, 1074 | | | |
| 2014 | Incorporating Amino Acids Composition and Functional Domains for Identifying Bacterial Toxin Proteins | Min-Gang Su; Chien-Hsun Huang; Tzong-Yi Lee; Yu-Ju Chen ; Hsin-Yi Wu | BioMed Research International 2014, 972692 | | | |
| 2018 | Inducing hair follicle neogenesis with secreted proteins enriched in embryonic skin | Fan, Sabrina Mai-Yi; Tsai, Chia-Feng; Yen, Chien-Mei; Lin, Miao-Hsia; Wang, Wei-Hung; Chan, Chih-Chieh; Chen, Chih-Lung; Phua, Kyle K.L.; Pan, Szu-Hua; Plikus, Maksim V.; Yu, Sung-Liang; Chen, Yu-Ju ; Lin, Sung-Jan | Biomaterials 167, 121-131 | | | |
| 2015 | Informatics View on the Challenges of Identifying Missing Proteins From Shotgun Proteomics | Wai-Kok Choong; Hui-Yin Chang; Ching-Tai Chen; Chia-Feng Tsai; Wen-Lian Hsu ; Ting-Yi Sung ; Yu-Ju Chen | Journal of Proteome Research 14(12), 5396-5407 | | | |
