| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2013 | DbPTM 3.0: An Informative Resource for Investigating Substrate Site Specificity and Functional Association of Protein Post-Translational Modifications | Lu, Cheng-Tsung; Huang, Kai-Yao; Su, Min-Gang; Lee, Tzong-Yi; Bretana, Neil Arvin; Chang, Wen-Chi; Chen, Yi-Ju; Chen, Yu-Ju ; Huang, Hsien-Da | NUCLEIC ACIDS RESEARCH 41(D1): D295-D305 | | | |
| 2014 | DbSNO 2.0: A Resource for Exploring Structural Environment, Functional and Disease Associations, and Regulatory Networks of Protein S-Nitrosylation | Yi-Ju Chen; Cheng-Tsung Lu; Min-Gang Su; Kai-Yao Huang; Wei-Chieh Ching; Hsiao-Hsiang Yang; Yen-Chen Liao; Yu-Ju Chen ; Tzong-Yi Lee | NUCLEIC ACIDS RESEARCH 43(D1), D503-D511 | | | |
| 2012 | dbSNO: a Database of Cysteine S-nitrosylation | Lee, Tzong-Yi; Chen, Yi-Ju; Lu, Cheng-Tsung; Ching, Wei-Chieh; Teng, Yu-Chuan; Huang, Hsien-Da; Chen, Yu-Ju | BIOINFORMATICS 28(17), 2293-2295 | | | |
| 2013 | Decoding the disease-associated proteins encoded in the human chromosome 4 | Chen, Lien-Chin; Liu, Mei-Ying; Hsiao, Yung-Chin; Chong, Wai-Kok; Wu, Hsin-Yi; Hsu, Wen-Lian; Liao, Pao-Chi; Sung, Ting-Yi; Tsai, Shih-Feng; Yu, Jau-Song; Chen, Yu-Ju | Journal of Proteome Research 12, 33-44 | | | |
| 2001 | Detection of ClCO with Time-resolved Fourier-transform Infrared Absorption Spectroscopy | Chen, Shih-Hao; Chu, Li-Kung; Chen, Yu-Ju ; Chen, I-Chia; Lee, Yuan-Pern | CHEMICAL PHYSICS LETTERS 333, 365-370 | | | |
| 2006 | Determination of SMN1/SMN2 Gene Dosage by a Quantitative Genotyping Platform Combining Capillary Electrophoresis and MALDI-TOF Mass Spectrometry | Kao, Hung-Yi; Su, Yi-Ning; Liao, Hsin-Kai; Liu, Ming S.; Chen, Yu-Ju | CLINICAL CHEMISTRY 52, 361-369 | | | |
| 2010 | Dihydrobenzoic Acid Modified Nanoparticle as a MALDI-TOF MS Matrix for Soft Ionization and Structure Determination of Small Molecules with Diverse Structures | Tseng, Mei-Chun ; Obena, Rofeamor; Lu, Ying-Wei; Lin, Po-Chiao; Lin, Ping-Yu; Yen, Yung-Sheng; Lin, Jiann-Tsuen; Huang, Li-De; Lu, Kuang-Lieh ; Lai, Long-Li; Lin, Chun-Cheng; Chen, Yu-Ju | JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 21, 1930-1939 | | | |
| 2001 | Direct Identification of Product CH2SH+/CH3S+ Structures in the Dissociation of CH3CH2SH+ and CH3SCH3+ via Collisional Activation | Chen, Yu-Ju ; Fenn, P. T.; Ng, C. Y. | CHEMICAL PHYSICS LETTERS 336, 105-108 | | | |
| 2019 | Direct Oligosaccharide Profiling using Thin-Layer Chromatography Coupled with Ionic Liquid-Stabilized Nanomatri-Assisted Laser Desorption-Ionization Mass Spectrometry | Elias Gizaw Mernie; Leta Deressa Tolesa; Ming-Jer Lee; Mei-Chun Tseng ; Yu-Ju Chen | | | | |
| 1997 | Dissociation of CH3SH+ by Collisional Activation: Evidence of Non-Statistical Behavior | Fenn, P. T.; Chen, Yu-Ju ; Stimson, S.; Ng, C. Y. | JOURNAL OF PHYSICAL CHEMISTRY A 101, 6513-6522 | | | |
| 2014 | Distinct Subpopulations of Head and Neck Cancer Cells with Different Levels of Intracellular Reactive Oxygen Species Exhibit Diverse Stemness, Proliferation, and Chemosensitivity | Ching-Wen Chang; Yu-Syuan Chen; Shiu-Huey Chou; Chia-Li Han; Chen, Yu-Ju ; Cheng-Chieh Yang; Chih-Yang Huang; Jeng-Fan Lo | CANCER RESEARCH DOI: 10.1158/0008-5472.CAN-14-0626 | | | |
| 2018 | DNA Demethylation by DNMT3A and DNMT3B in vitro and of Methylated Episomal DNA in Transiently Transfected Cells | Chatterjee, Biswanath; Lin, Miao-Hsia; Chen, Chun-Chang; Peng, Kai-Lin; Wu, Mu-Sheng; Tseng, Mei-Chun ; Chen, Yu-Ju ; Shen, Che-Kun James | Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1861(11), 1048-1061 | | | |
| 2015 | Effect of Sialylation on EGFR Phosphorylation and Resistance to Tyrosine Kinase Inhibition | Hsin-Yung Yen; Ying-Chih Liu; Nai-Yu Chen; Chia-Feng Tsai; Yi-Ting Wang; Yu-Ju Chen ; Tsui-Ling Hsu ; Pan-Chyr Yang; Chi-Huey Wong | Proceedings of the National Academy of Sciences of the United States of America(PNAS) 112(22), 6955-6960 | | | |
| 2023 | EGFR-T790M Mutation–Derived Interactome Rerouted EGFR Translocation Contributing to Gefitinib Resistance in Non-Small Cell Lung Cancer | Wu, Pei-Shan; Lin, Miao-Hsia; Hsiao, Jye-Chian; Lin, Pei-Yi; Pan, Szu-Hua; Chen, Yu-Ju | Molecular & Cellular Proteomics 22(9), 100624 | | | |
| 2006 | Ethylene Glycol-Protected Magnetic Nanoparticles for Multiplexed Immunoassay in Human Plasma | Lin, Po-Chiao; Chou, Po-Hung; Chen, Shu-Hua; Liao, Hsin Kai; Wang, Kai-Yi; Chen, Yu-Ju ; Lin, Chun-Cheng | SMALL 2(4), 485-489 | | | |
| 2018 | Evaluating the Possibility of Detecting Variants in Shotgun Proteomics via LeTE-Fusion Analysis Pipeline | Tung-Shing Mamie Lih; Wai-Kok Choong; Yu-Ju Chen ; Ting-Yi Sung | Journal of Proteome Research 17(9), 2937-2952 | | | |
| 2007 | Evaluation of Serum Amyloid A as a Biomarker for Gastric Cancer | Chan, De-Chuan; Chen, Cheng-Jueng; Chu, Heng-Cheng; Chang, Wei-Kuo; Yu, Jyh-Cherng; Chen, Yu-Ju ; Wen, Li-Li; Huang, Su-Ching; Ku, Chih-Hung; Liu, Yao-Chi; Chen, Jenn-Han | ANNALS OF SURGICAL ONCOLOGY 14, 84-93 | | | |
| 2017 | Exploring the expression bar code of SAA variants for gastric cancer detection | Deng-Chyang Wu; Kai-Yi Wang; Sophie S.W. Wang; Ching-Min Huang; Yi-Wei Lee; Michael Isaac Chen; Szu-An Chuang; Shu-Hua Chen; Ying-Wei Lu; Chun-Cheng Lin; Ka-Wo Lee; Wen-Hung Hsu; Wu Kun-Pin; Yu-Ju Chen | PROTEOMICS 17(11), 1600356 | | | |
| 2009 | Fabrication of Oriented Antibody-Conjugated Magnetic Nanoprobes and Their Immunoaffinity Application | Lin, Po-Chiao; Chen, Shu-Hua; Wang, Kai-Yi; Chen, Mu-Lin; Adak, Avijit Kumar; Hwu, Jih-Ru R.; Chen, Yu-Ju ; Lin, Chun-Cheng | ANALYTICAL CHEMISTRY 81 (21), 8774–8782 | | | |
| 2019 | Fluorescence “Turn-on” Lectin Sensors Fabricated by Ligand-Assisted Labeling Probes for Detecting Protein–Glycoprotein Interactions | Li, Pei-Jhen; Anwar, Mohammad Tarigue; Fan, Chen-Yo; Juang, Duane S.; Lin, Hsin-Yi; Chang, Tsung-Che; Kawade, Sachin Kisan; Chen, Hsiang-Jung; Chen, Yu-Ju ; Tan, Kui-Thong; Lin, Chun-Cheng | Biomacromolecules 21(2), 815-824 | | | |
