| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2017 | Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy | Nai-Wen Chang; Hong-Jie Dai; Yung-Yu Shih; Chi-Yang Wu; Mira Anne C Dela Rosa; Rofeamor P Obena; Chen, Yu-Ju ; Wen-Lian Hsu ; Yen-Jen Oyang | Database (Oxford) 2017, bax082 | | | |
| 1997 | Bond Selective Dissociation of CH3SH+ and C2H5SH+ via Collisional Activation | Chen, Yu-Ju ; Fenn, P. T.; Ng, C. Y. | JOURNAL OF CHEMICAL PHYSICS 106, 8274-8277 | | | |
| 2014 | Cancer-associated fibroblasts regulate the plasticity of lung cancer stemness via paracrine signalling | Chen, WJ; Ho, CC; Chang, YL; Chen, HY; Lin, CA; Ling, TY; Yu, SL; Yuan, SS ; Chen, YJ ; Lin, CY; Pan, SH; Chou, HY; Chen, YJ; Chang, GC; Chu, WC; Lee, YM; Lee, JY; Lee, PJ; Li, KC; Chen, HW; Yang, PC | Nature communications 5, 3472 | | | |
| 2005 | Carbohydrate-Encapsulated Gold Nanoparticles for Rapid Target Protein Identification and Binding Epitope Mapping | Chen, Yu-Ju ; Chen, Shu-Hua; Chien, Yuh-Yih; Chang, Yu-Wan; Liao, Hsin-Kai; Chang, Chih-Yang; Jan, Mi-Dan; Wang, Ken-Tseng; Lin, Chun-Cheng | CHEMBIOCHEM 6, 1169-1173 | | | |
| 2014 | Characterization and Identification of Protein O-GlcNAcylation Sites with Substrate Specificity | Hsin-Yi Wu; Cheng-Tsung Lu; Hui-Ju Kao; Yi-Ju Chen; Yi-Ju Chen ; Tzong-Yi Lee | BMC BIOINFORMATICS 15, S1 | | | |
| 1995 | Combining Theory with Experiment: Assessment of the Thermochemistry of SFn, SFn+, and SFn- | Cheung, Y. -S.; Chen, Yu-Ju ; Ng, C. Y.; Chiu, See-Wing; Li, Wai- Kee | JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 117,9725-9733 | | | |
| 2010 | Comparison of Membrane Fraction Proteomic Profiles of Normal and Cancerous Human Colorectal Tissues with Gel-assisted Digestion and iTRAQ Labeling Mass Spectrometry | Chen, Jinn-Shiun; Chen, Kuei-Tien; Fan, Chung-Wei; Han, Chia-Li; Chen, Yu-Ju ; Yu, Jau-Song; Chang, Yu-Sun; Chien, Chih-Wei; Wu, Chien-Peng; Hung, Ray-Ping; Chan, Err-Cheng | FEBS JOURNAL 277, 3028–3038 | | | |
| 2012 | Complementary Fe3+- and Ti4+-immobilized metal ion affinity chromatography for purification of acidic and basic phosphopeptides | Lai, Alan Chuan-Ying; Tsai, Chia-Feng; Hsu, Chuan-Chih; Sun, Yu-Ni; Chen, Yu-Ju | RAPID COMMUNICATIONS IN MASS SPECTROMETRY 26, 2186-2194 | | | |
| 2009 | Complementary quantitative proteomics reveals that transcription factor AP-4 mediates E-box-dependent complex formation for transcriptional repression of HDM2 | Ku, Wei-Chi; Chiu, Sung-Kay; Chen, Yi-Ju; Huang, Hsin-Hung; Wu, Wen-Guey; Chen, Yu-Ju | MOLECULAR & CELLULAR PROTEOMICS 8, 2034-2050 | | | |
| 2006 | Contribution of Guanine Exchange Factor H1 in Phorbol Ester-induced Apoptosis | Chang, Yuan-Chen; Lee, Hsiao-Hui; Chen, Yu-Ju ; Bokoch, Gary M.; Chang, Zee-Fen | CELL DEATH AND DIFFERENTIATION 13, 2023-2032 | | | |
| 2015 | Cyclic Alopecia and Abnormal Epidermal Cornification in Zdhhc13-Deficient Mice Reveal the Importance of Palmitoylation in Hair and Skin Differentiation | Liu, KM; Chen, YJ; Shen, LF; Saleem, Haddad AN; Song, IW; Chen, LY; Chen, YJ ; Wu, JY ; Yen, JJY ; Chen, YT | JOURNAL OF INVESTIGATIVE DERMATOLOGY 135, 2603-2610 | | | |
| 2013 | DbPTM 3.0: An Informative Resource for Investigating Substrate Site Specificity and Functional Association of Protein Post-Translational Modifications | Lu, Cheng-Tsung; Huang, Kai-Yao; Su, Min-Gang; Lee, Tzong-Yi; Bretana, Neil Arvin; Chang, Wen-Chi; Chen, Yi-Ju; Chen, Yu-Ju ; Huang, Hsien-Da | NUCLEIC ACIDS RESEARCH 41(D1): D295-D305 | | | |
| 2014 | DbSNO 2.0: A Resource for Exploring Structural Environment, Functional and Disease Associations, and Regulatory Networks of Protein S-Nitrosylation | Yi-Ju Chen; Cheng-Tsung Lu; Min-Gang Su; Kai-Yao Huang; Wei-Chieh Ching; Hsiao-Hsiang Yang; Yen-Chen Liao; Yu-Ju Chen ; Tzong-Yi Lee | NUCLEIC ACIDS RESEARCH 43(D1), D503-D511 | | | |
| 2012 | dbSNO: a Database of Cysteine S-nitrosylation | Lee, Tzong-Yi; Chen, Yi-Ju; Lu, Cheng-Tsung; Ching, Wei-Chieh; Teng, Yu-Chuan; Huang, Hsien-Da; Chen, Yu-Ju | BIOINFORMATICS 28(17), 2293-2295 | | | |
| 2013 | Decoding the disease-associated proteins encoded in the human chromosome 4 | Chen, Lien-Chin; Liu, Mei-Ying; Hsiao, Yung-Chin; Chong, Wai-Kok; Wu, Hsin-Yi; Hsu, Wen-Lian; Liao, Pao-Chi; Sung, Ting-Yi; Tsai, Shih-Feng; Yu, Jau-Song; Chen, Yu-Ju | Journal of Proteome Research 12, 33-44 | | | |
| 2001 | Detection of ClCO with Time-resolved Fourier-transform Infrared Absorption Spectroscopy | Chen, Shih-Hao; Chu, Li-Kung; Chen, Yu-Ju ; Chen, I-Chia; Lee, Yuan-Pern | CHEMICAL PHYSICS LETTERS 333, 365-370 | | | |
| 2006 | Determination of SMN1/SMN2 Gene Dosage by a Quantitative Genotyping Platform Combining Capillary Electrophoresis and MALDI-TOF Mass Spectrometry | Kao, Hung-Yi; Su, Yi-Ning; Liao, Hsin-Kai; Liu, Ming S.; Chen, Yu-Ju | CLINICAL CHEMISTRY 52, 361-369 | | | |
| 2010 | Dihydrobenzoic Acid Modified Nanoparticle as a MALDI-TOF MS Matrix for Soft Ionization and Structure Determination of Small Molecules with Diverse Structures | Tseng, Mei-Chun ; Obena, Rofeamor; Lu, Ying-Wei; Lin, Po-Chiao; Lin, Ping-Yu; Yen, Yung-Sheng; Lin, Jiann-Tsuen; Huang, Li-De; Lu, Kuang-Lieh ; Lai, Long-Li; Lin, Chun-Cheng; Chen, Yu-Ju | JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 21, 1930-1939 | | | |
| 2001 | Direct Identification of Product CH2SH+/CH3S+ Structures in the Dissociation of CH3CH2SH+ and CH3SCH3+ via Collisional Activation | Chen, Yu-Ju ; Fenn, P. T.; Ng, C. Y. | CHEMICAL PHYSICS LETTERS 336, 105-108 | | | |
| 2019 | Direct Oligosaccharide Profiling using Thin-Layer Chromatography Coupled with Ionic Liquid-Stabilized Nanomatri-Assisted Laser Desorption-Ionization Mass Spectrometry | Elias Gizaw Mernie; Leta Deressa Tolesa; Ming-Jer Lee; Mei-Chun Tseng ; Yu-Ju Chen | | | | |
