| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2019 | A-to-I RNA editing contributes to the persistence of predicted damaging mutations in populations | Te-Lun Mai; Trees-Juen Chuang | GENOME RESEARCH 29(11), 1766-1776 | | | |
| 2017 | Assessment of imprinting- and genetic variation-dependent monoallelic expression using reciprocal allele descendants between human family trios | Trees-Juen Chuang ; Yu-Hsiang Tseng; Chia-Ying Chen; Yi-Da Wang | SCIENTIFIC REPORTS 7, 7038 | | | |
| 2022 | CircMiMi: a stand‑alone software for constructing circular RNA‑microRNA‑mRNA interactions across species | Tai-Wei Chiang; Te-Lun Mai; Trees-Juen Chuang | BMC Bioinformatics 23, 164 | | | |
| 2021 | Comparative analyses of single-cell transcriptomic profiles between In vitro totipotent blastomere-like cells and In vivo early mouse embryonic cells | Lin, Po-Yu; Yang, Denny; Chuang, Chi-Hsuan; Lin, Hsuan; Chen, Wei-Ju; Chen, Chia-Ying; Chuang, Trees-Juen ; Lai, Chien-Ying; Li, Long-Yuan; Schuyler, Scott C.; Lu, Frank Leigh; Liu, Yu-Chuan; Lu, Jean | Cells 10(11), 3111 | | | |
| 2014 | DNA methylation is associated with an increased level of conservation at nondegenerate nucleotides in mammals | Trees-Juen Chuang ; Feng-Chi Chen | Molecular Biology and Evolution 31(2), 387-396 | | | |
| 2020 | Genome-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism | Yen-Ju Chen; Chia-Ying Chen; Te-Lun Mai; Chih-Fan Chuang; Yu-Chen Chen; Sachin Kumar Gupta; Laising Yen; Yi-Da Wang; Trees-Juen Chuang | GENOME RESEARCH 30(3), 375-391 | | | |
| 2014 | Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency | Chan-Shuo Wu; Chun-Ying Yu; Ching-Yu Chuang; Michael Hsiao; Cheng-Fu Kao; Hung-Chih Kuo; Trees-Juen Chuang | Genome Research 24(1), 25-36 | | | |
| 2018 | Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells | Chuang, Trees-Juen ; Chen, Yen-Ju; Chen, Chia-Ying; Mai, Te-Lun; Wang, Yi-Da; Yeh, ChungShu; Yang, Min-Yu; Hsiao, Yu-Ting; Chang, Tien-Hsien ; Kuo, Tzu-Chien; Cho, Hsin-Hua; Shen, Chia-Ning ; Kuo, Hung-Chih ; Lu, Mei-Yeh ; Chen, Yi-Hua; Hsieh, Shan-Chi; Chiang, Tai-Wei | NUCLEIC ACIDS RESEARCH 46(7), 3671-3691 | | | |
| 2014 | Is an Observed Non-co-linear RNA Product Spliced in trans, in cis or just in vitro? | Chun-Ying Yu; Hsiao-Jung Liu; Li-Yuan Hung; Hung-Chih Kuo; Trees-Juen Chuang | NUCLEIC ACIDS RESEARCH 42(14), 9410-9423 | | | |
| 2019 | NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors | Chia-Ying Chen; Trees-Juen Chuang | BMC BIOINFORMATICS 20, 3 | | | |
| 2014 | The evolution of the coding exome of the Arabidopsisspecies - the influences of DNA methylation, relative exon position, and exon length | Feng-Chi Chen; Trees-Juen Chuang ; Hsuan-Yu Lin; Min-Kung Hsu | BMC EVOLUTIONARY BIOLOGY 14, 145 | | | |
| 2019 | Transcriptomopathies of Pre- and Post-Symptomatic Frontotemporal Dementia-like Mice with TDP-43 Depletion in Forebrain Neurons | Lien-Szu Wu; Wei-Cheng Cheng; Chia-Ying Chen; Ming-Che Wu; Yi-Chi Wang; Yu-Hsiang Tseng; Trees-Juen Chuang ; C-K James Shen | Acta Neuropathologica Communications 7(1), 50 | | | |
