| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2019 | Accelerated diversifications in three diverse families of morphologically complex lichen-forming fungi link to major historical events | Huang, Jen-Pan ; Kraichak, Ekaphan; Leavitt, Steven D.; Nelsen, Matthew P.; Lumbsch, H. Thorsten | Scientific Reports 9, 8518 | | | |
| 2022 | Comparative Phylogeography in the Taiwan–Luzon Volcanic Belt Indicates Fast Diversification History of Pachyrhynchus Weevils (Coleoptera: Curculionidae) | Ye, Yan-Jhih; Huang, Jen-Pan ; Nguyen, Hung N; Villanueva, Reagan Joseph T; Amarga, Ace Kevin S; Tseng, Hui-Yun | Insect Systematics and Diversity 6(6), 4 | | | |
| 2019 | Different species or genetically divergent populations? Integrative species delimitation of the Primulina hochiensis complex from isolated karst habitats | Yang, Lihua; Kong, Hanghui; Huang, Jen-Pan ; Kang, Ming | Molecular Phylogenetics and Evolution 132, 219-231 | | | |
| 2021 | Evolution of adult male horn developmental phenotypes and character displacement in Xylotrupes beetles (Scarabaeidae) | Huang, Jen-Pan ; Morgan, Brett | Ecology and Evolution 11(10), 5503-5510 | | | |
| 2019 | Evolution of the latitudinal diversity gradient in the hyperdiverse ant genus Pheidole | Economo, Evan P.; Huang, Jen-Pan ; Fischer, Georg; Sarnat, Eli M.; Narula, Nitish; Janda, Milan; Guénard, Benoit; Longino, John T.; Knowles, L. Lacey | Global Ecology and Biogeography 28(4), 456-470 | | | |
| 2022 | Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages | Lee, Tracy J; Liu, Yuching; Liu, Wei-An; Lin, Yu-Fei; Lee, Hsin-Han; Ke, Huei-Mien; Huang, Jen-Pen ; Lu, Mei-Yeh Jade ; Hsieh, Chia-Lun; Chung, Kuo-Fang ; Liti, Gianni; Tsai, Isheng J | Genome Research 32(5), 864-877 | | | |
| 2021 | First detection of Colletotrichum fructicola (Ascomycota) on horsehair worms (Nematomorpha) | De Vivo, Mattia; Wang, Wen-Hong; Chen, Ko-Hsuan ; Huang, Jen-Pan | Biodiversity Data Journal 9, e72798 | | | |
| 2020 | Genome-scale data reveal the role of hybridization in lichen-forming fungi | Keuler, Rachel; Garretson, Alexis; Saunders, Theresa; Erickson, Robert J.; St. Andre, Nathan; Grewe, Felix; Smith, Hayden; Lumbsch, H. Thorsten; Huang, Jen-Pan ; St. Clair, Larry L.; Leavitt, Steven D. | Scientific Reports 10(1), 1497 | | | |
| 2019 | Holocene Population Decline and Conservation Implication for the Western Hercules Beetle, Dynastes grantii (Coleoptera, Scarabaeidae) | Jen-Pan Huang | Journal of Heredity 110(5), 629-637 | | | |
| 2021 | Incipient speciation and its impact on taxonomic decision: a case study using a sky island sister-species pair of stag beetles (Lucanidae: Lucanus) | Chou, Ming-Hsun; Tseng, Wei-Zhe; Sang, Yao-De; Morgan, Brett; De Vivo, Mattia; Kuan, Yi-Hsiu; Wang, Liang-Jong; Chen, Wei-Yun; Huang, Jen-Pan | Biological Journal of the Linnean Society 134(3), 745-759 | | | |
| 2022 | Integrative species delimitation reveals fine-scale allopatric speciation in a good-flying insect: a case study on Cylindera pseudocylindriformis complex (Coleoptera, Cicindelidae) | Chou, Ming-Hsun; Chu, I-Hsuan; Lau, Daniel; Huang, Jen-Pan | Invertebrate Systematics 36(10), 910-925 | | | |
| 2022 | Interpreting phylogenetic conflict: Hybridization in the most speciose genus of lichen-forming fungi | Keuler, Rachel; Jensen, Jacob; Barcena-Peña, Alejandrina; Grewe, Felix; Thorsten, Lumbsch H.; Huang, Jen-Pan ; Leavitt, Steven D. | Molecular Phylogenetics and Evolution 174, 107543 | | | |
| 2020 | Is population subdivision different from speciation? From phylogeography to species delimitation | Huang, Jen‐Pan | Ecology and Evolution 10(14), 6890-6896 | | | |
| 2021 | Isolation by geographical distance after release from Pleistocene refugia explains genetic and phenotypic variation in Xylotrupes siamensis (Coleoptera: Scarabaeidae) | Morgan, Brett; Huang, Jen-Pan | Zoological Journal of the Linnean Society 192(1), 117-129 | | | |
| 2022 | Long-read sequencing data reveals dynamic evolution of mitochondrial genome size and the phylogenetic utility of mitochondrial DNA in Hercules beetles (Dynastes; Scarabaeidae) | Morgan, Brett; Wang, Tzi-Yuan ; Chen, Yi-Zhen; Moctezuma, Victor; Burgos, Oscar; Le, My Hanh; Huang, Jen-Pan | Genome Biology and Evolution 14(10), evac147 | | | |
| 2020 | Macroevolutionary integration of phenotypes within and across ant worker castes | Friedman, Nicholas R.; Lecroq Bennet, Beatrice; Fischer, Georg; Sarnat, Eli M.; Huang, Jen‐Pan ; Knowles, L. Lacey Knowles; Economo, Evan P. | Ecology and Evolution 10(17), 9371-9383 | | | |
| 2022 | Modeling the geographical distributions of Chordodes formosanus and its mantis hosts in Taiwan, with considerations for their niche overlaps | De Vivo, Mattia; Huang, Jen-Pan | Ecology and Evolution 12(11), e9546 | | | |
| 2019 | Multiple historical processes obscure phylogenetic relationships in a taxonomically difficult group (Lobariaceae, Ascomycota) | Widhelm, Todd J.; Grewe, Felix; Huang, Jen-Pan ; Mercado-Díaz, Joel A.; Goffinet, Bernard; Lücking, Robert; Moncada, Bibiana; Mason-Gamer, Roberta; Lumbsch, H. Thorsten | Scientific Reports 9, 8968 | | | |
| 2020 | Paraphyletic species no more – genomic data resolve a Pleistocene radiation and validate morphological species of the Melanoplus scudderi complex (Insecta: Orthoptera) | Huang, Jen-Pan ; Hill, JoVonn G.; Ortego, Joaquín; Knowles, L. Lacey | Systematic Entomology Early View | | | |
| 2020 | Repeated Colonization Between Arid and Seasonal Wet Habitats, Frequent Transition Among Substrate Preferences, and Chemical Diversity in Western Australian Xanthoparmelia Lichens | Autumn, Kendra; Barcenas-Peña, Alejandrina; Kish-Levine, Samantha; Huang, Jen-Pan ; Lumbsch, H. Thorsten | Frontiers in Ecology and Evolution 8, 129 | | | |
