| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2021 | Assessing the rectal mucosal microbiota improves mild ulcerative colitis detection sensitivity and evaluation | YF Lin; CM Sung; HM Ke; WA Liu; HY Huang; MJ Lu; IJ Tsai ; SY Hsieh | gut microbes | | | |
| 2021 | Biogeographic Changes in Forest Soil Microbial Communities of Offshore Islands—A Case Study of Remote Islands in Taiwan | Chang, Ed-Haun; Tsai, Isheng Jason ; Jien, Shih-Hao; Tian, Guanglong; Chiu, Chih-Yu | Forests 12(1), 4 | | | |
| 2019 | Blast fungal genomes show frequent chromosomal changes, gene gains and losses, and effector gene turnover | Gomez Luciano, LB; Tsai, IJ ; Chuma, I; Tosa, Y; Chen, YH; Li, JY; Li, MY; Jade Lu, MY ; Nakayashiki, H; Li, WH | Molecular Biology and Evolution 36(6), 1148-1161 | | | |
| 2022 | C. elegans BLMP-1 controls apical epidermal cell morphology by repressing expression of mannosyltransferase bus-8 and molting signal mlt-8 | Wu, Yun-Zhe; Jiang, Hang-Shiang; Han, Hsiao-Fen; Li, Po-Hsuan; Lu, Min R.; Tsai, Isheng Jason ; Wu, Yi-Chun | Developmental Biology 486, 96-108 | | | |
| 2022 | Comparative genomic and transcriptomic analyses of trans-kingdom pathogen Fusarium solani species complex reveal degrees of compartmentalization | Hoh, Daphne Z.; Lee, Hsin-Han; Wada, Naohisa; Liu, Wei-An; Lu, Min R.; Lai, Cheng-Kuo; Ke, Huei-Mien; Sun, Pei-Feng; Tang, Sen-Lin ; Chung, Wen-Hsin; Chen, Ying-Lien; Chung, Chia-Lin; Tsai, Isheng Jason | BMC Biology 20(1), 236 | | | |
| 2019 | Comparative genomics of the major parasitic worms | Avril Coghlan; Rahul Tyagi; James A. Cotton; Nancy Holroyd; Bruce A. Rosa; Isheng Jason Tsai ; Dominik R. Laetsch; Robin N. Beech; Tim A. Day; Kymberlie Hallsworth-Pepin; Huei-Mien Ke; Tzu-Hao Kuo; Tracy J. Lee; John Martin; Rick M. Maizels; Prudence Mutowo; Philip Ozersky; John Parkinson; Adam J. Reid; Neil D. Rawlings; Diogo M. Ribeiro; Lakshmipuram Seshadri Swapna; Eleanor Stanley; David W. Taylor; Nicolas J. Wheeler; Mostafa Zamanian; Xu Zhang; Fiona Allan; Judith E. Allen; Kazuhito Asano; Simon A. Babayan; Germanus Bah; Helen Beasley; Hayley M. Bennett; Stewart A. Bisset; Estela Castillo; Joseph Cook; Philip J. Cooper; Teresa Cruz-Bustos; Carmen Cuéllar; Eileen Devaney; Stephen R. Doyle; Mark L. Eberhard; Aidan Emery; Keeseon S. Eom; John S. Gilleard; Daria Gordon; Yvonne Harcus; Bhavana Harsha; John M. Hawdon; Dolores E. Hill; Jane Hodgkinson; Petr Horák; Kevin L. Howe; Thomas Huckvale; Martin Kalbe; Gaganjot Kaur; Taisei Kikuchi; Georgios Koutsovoulos; Sujai Kumar; Andrew R. Leach; Jane Lomax; Benjamin Makepeace; Jacqueline B. Matthews; Antonio Muro; Noel Michael O’Boyle; Peter D. Olson; Antonio Osuna; Felix Partono; Kenneth Pfarr; Gabriel Rinaldi; Pilar Foronda; David Rollinson; Mercedes Gomez Samblas; Hiroshi Sato; Manuela Schnyder; Tomáš Scholz; Myriam Shafie; Vincent N. Tanya; Rafael Toledo; Alan Tracey; Joseph F. Urban; Lian-Chen Wang; Dante Zarlenga; Mark L. Blaxter; Makedonka Mitreva; Matthew Berriman | Nature Genetics 51(1), 163-174 | | | |
| 2017 | Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi clade | Ke, Huei-Mien; Prachumwat, Anuphap; Yu, Chun-Ping; Yang, Yi-Ting; Promsri, Sutitcha; Liu, Kuan-Fu; Lo, Chu-Fang; Lu, Mei-Yeh Jade; Lai, Mei-Chin; Tsai, Isheng J. ; Li, Wen-Hsiung | Scientific Reports 7, 41394 | | | |
| 2020 | Comparative transcriptomics across nematode life cycles reveal gene expression conservation and correlated evolution in adjacent developmental stages | Lu, MR; Lai, CK; Liao, BY; Tsai, IJ | Genome biology and evolution 12(7), 1019-1030 | | | |
| 2023 | Detecting intragenic trans-splicing events from non-co-linearly spliced junctions by hybrid sequencing | Yu-Chen Chen; Chia-Ying Chen; Tai-Wei Chiang; Ming-Hsien Chan; Michael Hsiao ; Huei-Mien Ke; Isheng Jason Tsai ; Trees-Juen Chuang | Nucleic Acids Research 51(15), 7777-7797 | | | |
| 2020 | Establishment of three human induced pluripotent stem cell lines from a type 1 diabetic family harboring sequence variants associated with autoimmunity | E.P.F. Chu; C.H. Lin; C.H.H. Cho; I.F. Cheng; T.C. Kuo R.Y. Chen; C.N. Liao; J.C. Cheng; J.I.S. Tsai ; P.C. Wang; S.J. Chang; C.N. Shen | Stem Cell Research 49, 102029 | | | |
| 2019 | Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus. | Lee, HH; Ke, HM; Lin, CI; Lee, TJ; Chung, CL; Tsai, IJ | Genome biology and evolution 11(10), 2774-2788 | | | |
| 2023 | Evolution and Diversity of Bioluminescent Fungi | Ke, Huei-Mien; Lu, Min R.; Chang, Chiung-Chih; Hsiao, Chen; Ou, Jie-Hao; Taneyama, Yuichi; Tsai, Isheng Jason | The Mycota (MYCOTA, volume 14) (Switzerland : Springer) | | | |
| 2022 | Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages | Lee, Tracy J; Liu, Yuching; Liu, Wei-An; Lin, Yu-Fei; Lee, Hsin-Han; Ke, Huei-Mien; Huang, Jen-Pen ; Lu, Mei-Yeh Jade ; Hsieh, Chia-Lun; Chung, Kuo-Fang ; Liti, Gianni; Tsai, Isheng J | Genome Research 32(5), 864-877 | | | |
| 2022 | Genome Assembly and Evolutionary Analysis of the Mandarin Duck Aix galericulata Reveal Strong Genome Conservation among Ducks | Ng, Chen Siang; Lai, Cheng-Kuo; Ke, Huei-Mien; Lee, Hsin-Han; Chen, Chih-Feng; Tang, Pin-Chi; Cheng, Hsu-Chen; Lu, Meiyeh J. ; Li, Wen-Hsiung ; Tsai, Isheng Jason | Genome Biology and Evolution 14(6), evac083 | | | |
| 2020 | Genome plasticity in Paramecium bursaria revealed by population genomics | YH Cheng; CFJ Liu; YH Yu; YT Jhou; M Fujishima; IJ Tsai ; JY Leu | BMC BIOLOGY 18, 180 | | | |
| 2022 | Investigation of asymptomatic infection of Phellinus noxius in herbaceous plants | Chen, Chia-Yu; Wu, Zong-Chi; Liu, Tse-Yen; Yu, Shiang-Shiuan; Tsai, Jyh-Nong; Tsai, Yu-Chang; Tsai, Isheng Jason ; Chung, Chia-Lin | Phytopathology 113(3), 460-469 | | | |
| 2020 | Mycena genomes resolve the evolution of fungal bioluminescence | Ke, Huei-Mien; Lee, Hsin-Han; Lin, Chan-Yi Ivy; Liu, Yu-Ching; Lu, Min R.; Hsieh, Jo-Wei Allison; Chang, Chiung-Chih; Wu, Pei-Hsuan; Lu, Meiyeh Jade ; Li, Jeng-Yi; Shang, Gaus; Lu, Rita Jui-Hsien; Nagy, László G.; Chen, Pao-Yang ; Kao, Hsiao-Wei; Tsai, Isheng Jason | Proceedings of the National Academy of Sciences 117(49), 31267-31277 | | | |
| 2020 | Nearly Complete Genome Assembly of the Pinewood Nematode Bursaphelenchus xylophilus Strain Ka4C1 | M Dayi; S Sun; Y Maeda; R Tanaka; A Yoshida; IJ Tsai ; T Kikuchi | Microbiology Resource Announcements 9(42), e01002-20 | | | |
| 2020 | Nest microbiota and pathogen abundance in sea turtle hatcheries | Hoh, Daphne Z.; Lin, Yu-Fei; Liu, Wei-An; Sidique, Siti Nordahliawate Mohamed; Tsai, Isheng Jason | Fungal Ecology 47, 100964 | | | |
| 2022 | Possible stochastic sex determination in Bursaphelenchus nematodes | Shinya, Ryoji; Sun, Simo; Dayi, Mehmet; Tsai, Isheng Jason ; Miyama, Atsushi; Chen, Anthony Fu; Hasegawa, Koichi; Antoshechkin, Igor; Kikuchi, Taisei; Sternberg, Paul W. | Nature Communications 13, 2574 | | | |
