| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2021 | Comparative analysis of zooplankton diversities and compositions estimated from complement DNA and genomic DNA amplicons, metatranscriptomics, and morphological identifications | Machida, RJ ; Kurihara, H; Nakajima, R; Sakamaki, T; Lin, YY; Furusawa, K | ICES Journal of Marine Science 78(9), 3428-3443 | | | |
| 2019 | GenBank is a reliable resource for 21st century biodiversity research | Leray, M; Knowlton, N; Ho, SL; Nguyen, BN; Machida, RJ | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 116 (45), 22651-22656 | | | |
| 2017 | Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples | Machida, RJ ; Leray, M; Ho, SL; Knowlton, N | Scientific Data 4, 170027 | | | |
| 2021 | New insights into biodiversity, biogeography, ecology, and evolution of marine zooplankton based on molecular approaches | Bucklin, A; Peijnenburg, KTCA; Kosobokova, K; Machida, RJ | ICES Journal of Marine Science 78(9), 3281-3287 | | | |
| 2019 | Nuclear and mitochondrial ribosomal ratio as an index of animal growth rate | Kong, WL; Miki, T; Lin, YY; Makino, W; Urabe, J; Gu, SH; Machida, RJ | LIMNOLOGY AND OCEANOGRAPHY-METHODS 17(11), 575-584 | | | |
| 2017 | Occurrence of Mitochondrial CO1 Pseudogenes in Neocalanus plumchrus (Crustacea: Copepoda): Hybridization Indicated by Recombined Nuclear Mitochondrial Pseudogenes | Machida, RJ ; Lin, YY | PLOS ONE 12(2), e0172710 | | | |
| 2020 | Reply to Locatelli et al.: Evaluating species-level accuracy of GenBank metazoan sequences will require experts’ effort in each group | Leray, M; Knowlton, N; Ho, SL; Nguyen, BN; Machida, RJ | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 117(51), 32213-32214 | | | |
| 2020 | Seabed mining could come at a high price for a unique fauna | Leray, M; Machida, RJ | MOLECULAR ECOLOGY 29(23), 4506-4509 | | | |
| 2021 | To the light side: molecular diversity and morphology of stomatopod larvae and juveniles (Crustacea: Malacostraca: Stomatopoda) from crustose coralline algal reefs in Taiwan | KJH Wong; YF Tsao; PC Tsai; WP Hsieh; HR Li; RJ Machida ; BKK Chan | Marine Biodiversity 51, 20 | | | |
| 2019 | Underestimated species diversity and hidden habitat preference in Moina (Crustacea, Cladocera) revealed by integrative taxonomy | Makino, W; Machida, RJ ; Okitsu, J; Nisikawa, U | HYDROBIOLOGIA 847, 857-878 | | | |
| 2021 | Using metatranscriptomics to estimate the diversity and composition of zooplankton communities | Lopez, MLD; Lin, Y; Sato, M; Hsieh, CH; Shiah, FK ; Machida, RJ | MOLECULAR ECOLOGY RESOURCES 22(2), 638-652 | | | |
| 2022 | Utilisation of Oxford Nanopore sequencing to generate six complete gastropod mitochondrial genomes as part of a biodiversity curriculum | Mattia De Vivo; Hsin-Han Lee; Yu-Sin Huang; Niklas Dreyer; Chia-Ling Fong; Felipe Monteiro Gomes de Mattos; Dharmesh Jain; Yung-Hui Victoria Wen; John Karichu Mwihaki; Tzi-Yuan Wang ; Ryuji J Machida ; John Wang ; Benny KK Chan ; Isheng Jason Tsai | Scientific Reports 12(1), 9973 | | | |
