| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2022 | A metagenomics study of hexabromocyclododecane degradation with a soil microbial community | Yi-Jie Li; Chia-Hsien Chuang; Wen-Chih Cheng; Shu-Hwa Chen; Wen-Ling Chen; Yu-Jie Lin; Chung-Yen Lin ; Yang-hsin Shih | Journal of Hazardous Materials 430, 128465 | | | |
| 2021 | A Yes-Associated Protein (YAP) and Insulin-like Growth Factor 1 Receptor (IGF-1R) Signaling Loop Is Involved in Sorafenib Resistance in Hepatocellular Carcinoma | Mai-Huong T. Ngo; Sue-Wei Peng; Yung-Che Kuo; Chun-Yen Lin ; Ming-Heng Wu; Chia-Hsien Chuang; Cheng-Xiang Kao; Han-Yin Jeng; Gee-Way Lin; Thai-Yen Ling; Te-Sheng Chang; Yen-Hua Huang | Cancers 13(15), 3812 | | | |
| 2021 | AI4AMP: An Antimicrobial Peptide Predictor Using Physicochemical Property-Based Encoding Method and Deep Learning | Tzu-Tang Lin; Li-Yen Yang; I-Hsuan Lu; Wen-Chih Cheng; Zhe-Ren Hsu; Shu-Hwa Chen; Chung-Yen Lin | mSystems 6(6), e0029921 | | | |
| 2017 | An machine-learning approach based on quality-score and K-mer landscape for NGS de novo genome assembly | Li-An Yang; Wei-Chun Chung; Yu-Jung Chang; Shu-Hwa Chen; Chung-Yen Lin ; Jan-Ming Ho | | | | |
| 2021 | Androgenic sensitivities and ovarian gene expression profiles prior to treatment in Japanese eel (Anguilla japonica) | Yung-Sen Huang; Wen-Chih Cheng; Chung-Yen Lin | Marine Biotechnology 23, 430-444 | | | |
| 2021 | ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq | Rita Jui-Hsein Lu; Yen-Ting Liu; Chih Wei Huang; Ming-Ren Yen; Chung-Yen Lin ; Pao-Yang Chen | FRONTIERS IN GENETICS 11, 618478 | | | |
| 2014 | CloudDOE: A User-Friendly Tool for Deploying Hadoop Clouds and Analyzing High-Throughput Sequencing Data with MapReduce | Wei-Chun Chung; Chien-Chih Chen; Jan-Ming Ho ; Chung-Yen Lin ; Wen-Lian Hsu ; Yu-Chun Wang; Der-Tsai Lee ; Feipei Lai; Chih-Wei Huang; Yu-Jung Chang | PLoS One 9(6):e98146 | | | |
| 2022 | Development of Disease-Resistance-Associated Microsatellite DNA Markers for Selective Breeding of Tilapia (Oreochromis spp.) Farmed in Taiwan | Chen, Che-Chun; Chang-Wen Huang; Chung-Yen Lin ; Chia-Hui Ho; Hong N. Pham; Te-Hua Hsu; Tzu-Tang Lin; Rong-Hwa Chen; Shuenn-Der Yang; Chin-I. Chang; Hong-Yi Gong | Genes 13(1), 99 | | | |
| 2020 | EpiMOLAS: an intuitive web-based framework for genome-wide DNA methylation analysis | Sheng-Yao Su; I-Hsuan Lu; Wen-Chih Cheng; Wei-Chun Chung; Pao-Yang Chen ; Jan-Ming Ho ; Shu-Hwa Chen; Chung-Yen Lin | BMC Genomics 21, 163 | | | |
| 2020 | Gut Fecal Microbiota Transplant in a Mouse Model of Orthotopic Rectal Cancer | Chen, Yen-Cheng; Miao, Zhi-Feng; Yip, Kwan-Ling; Cheng, Yi-An; Liu, Chung-Jung; Li, Ling-Hui ; Lin, Chung-Yen ; Wang, Jiunn-Wei; Wu, Deng-Chyang; Cheng, Tian-Lu; Wang, Jaw-Yuan | Frontiers in Oncology 10, 568012 | | | |
| 2021 | Identification of Genes Related to Cold Tolerance and Novel Genetic Markers for Molecular Breeding in Taiwan Tilapia (Oreochromis spp.) via Transcriptome Analysis | Chu, Pei-Yun; Jia-Xian Li; Te-Hua Hsu; Hong-Yi Gong; Chung-Yen Lin ; Jung-Hua Wang; Chang-Wen Huang | Animals 1(12), 3538 | | | |
| 2020 | Index of Cancer-Associated Fibroblasts Is Superior to the Epithelial-Mesenchymal Transition Score in Prognosis Prediction | Ying-Chieh Ko; Ting-Yu Lai; Shu-Ching Hsu; Fu-Hui Wang; Sheng-Yao Su; Yu-Lian Chen; Min-Lung Tsai; Chung-Chun Wu; Jenn-Ren Hsiao; Jang-Yang Chang; Yi-Mi Wu; Dan R Robinson; Chung-Yen Lin ; Su-Fang Lin | Cancers 12, E1718 | | | |
| 2021 | Investigating the Transcriptomic and Expression Presence-Absence Variation Exist in Japanese Eel (Anguilla japonica), a Primitive Teleost | Yung-Sen Huang; Chung-Yen Lin ; Wen-Chih Cheng | Marine Biotechnology 23, 943-954 | | | |
| 2020 | mySORT: A Web Framework by using Deconvolution Approach to Estimating Immune Cell Composition from Complex Tissues | Shu-Hwa Chen; Bo-Yi Yu; Wen-Yu Kuo; Ya-Bo Lin; Sheng-Yao Su; I-Hsuan Lu; Chung-Yen Lin | Preprint | | | |
| 2020 | Piwi reduction in the aged niche eliminates germline stem cells via Toll-GSK3 signaling | Kun-Yang Lin; Wen-Der Wang; Chi-Hung Lin; Elham Rastegari; Yu-Han Su; Yu-Tzu Chang; Yung-Feng Liao ; Yi-Chieh Chang; Haiwei Pi; Bo-Yi Yu; Shu-Hwa Chen; Chung-Yen Lin ; Mei-Yeh Lu ; Tsu-Yi Su; Fei-Yang Tzou; Chih-Chiang Chan; Hwei-Jan Hsu | Nature Communications 11, 3147 | | | |
| 2019 | SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies | Li-An Yang; Yu-Jung Chang; Shu-Hwa Chen; Chung-Yen Lin ; Jan-Ming Ho | BMC Genomics 19, 238 | | | |
| 2021 | The degradation mechanisms of Rhodopseudomonas palustris toward hexabromocyclododecane by time-course transcriptome analysis | Yi-Jie Li; Reuben Wang; Chung-Yen Lin ; Shu-Hwa Chen; Chia-Hsien Chuang; Tzu-Ho Chou; Chi-Fang Ko; Pei-Hsin Chou; Chi-Te Liu; Yang-hsin Shih | Chemical Engineering Journal 425, 130489 | | | |
| 2020 | The role of the bacterial protease Prc in the uropathogenesis of extraintestinal pathogenic Escherichia coli | Wen-Chun Huang; Chung-Yen Lin ; Masayuki Hashimoto; Jiunn-Jong Wu; Ming-Cheng Wang; Wei-Hung Lin; Chang-Shi Chen & Ching-Hao Teng | Journal of Biomedical Science 27, 14 | | | |
| 2019 | Using high-throughput transcriptome sequencing to investigate the biotransformation mechanism of hexabromocyclododecane with Rhodopseudomonas palustris in water | Reuben Wang; Chung-Yen Lin ; Shu-Hwa Chen; Kai-Jiun Lo; Chi-Te Liu; Tzu-Ho Chou; Yang-hsin Shih | Science of the Total Environment 692, 249-258 | | | |
