Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
2021 | A data-independent acquisition-based global phosphoproteomics system enables deep profiling | Kitata, Reta Birhanu; Choong, Wai-Kok; Tsai, Chia-Feng; Lin, Pei-Yi; Chen, Bo-Shiun; Chang, Yun-Chien; Nesvizhskii, Alexey I.; Sung, Ting-Yi; Chen, Yu-Ju | Nature Communications 12, 2539 | | | |
2021 | An Enzyme-Mediated Aza-Michael Addition Is Involved in the Biosynthesis of an Imidazoyl Hybrid Product of Conidiogenone B | Hewage, Ranuka T.; Huang, Rou-Jie; Lai, Shu-Jung; Lien, Ya-Chu; Weng, Shao-Hsing; Li, Dehai; Chen, Yu-Ju ; Wu, Shih-Hsiung ; Chein, Rong-Jie ; Lin, Hsiao-Ching | Organic Letters 23(5), 1904-1909 | | | |
2017 | Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy | Nai-Wen Chang; Hong-Jie Dai; Yung-Yu Shih; Chi-Yang Wu; Mira Anne C. Dela Rosa; Rofeamor P. Obena; Yu-Ju Chen ; Wen-Lian Hsu; Yen-Jen Oyang | DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2017:bax082 | | | |
2014 | Cancer-associated fibroblasts regulate the plasticity of lung cancer stemness via paracrine signalling | Chen, WJ; Ho, CC; Chang, YL; Chen, HY; Lin, CA; Ling, TY; Yu, SL; Yuan, SS ; Chen, YJ ; Lin, CY; Pan, SH; Chou, HY; Chen, YJ; Chang, GC; Chu, WC; Lee, YM; Lee, JY; Lee, PJ; Li, KC; Chen, HW; Yang, PC | Nature communications 5, 3472 | | | |
2019 | Direct Oligosaccharide Profiling using Thin-Layer Chromatography Coupled with Ionic Liquid-Stabilized Nanomatri-Assisted Laser Desorption-Ionization Mass Spectrometry | Elias Gizaw Mernie; Leta Deressa Tolesa; Ming-Jer Lee; Mei-Chun Tseng ; Yu-Ju Chen | | | | |
2018 | Evaluating the Possibility of Detecting Variants in Shotgun Proteomics via LeTE-Fusion Analysis Pipeline | Tung-Shing Mamie Lih; Wai-Kok Choong; Yu-Ju Chen ; Ting-Yi Sung | Journal of Proteome Research 17(9), 2937-2952 | | | |
2017 | Exploring the expression bar code of SAA variants for gastric cancer detection | Deng-Chyang Wu; Kai-Yi Wang; Sophie S.W. Wang; Ching-Min Huang; Yi-Wei Lee; Michael Isaac Chen; Szu-An Chuang; Shu-Hua Chen; Ying-Wei Lu; Chun-Cheng Lin; Ka-Wo Lee; Wen-Hung Hsu; Wu Kun-Pin; Yu-Ju Chen | PROTEOMICS 17(11), 1600356 | | | |
2019 | Fluorescence “Turn-on” Lectin Sensors Fabricated by Ligand-Assisted Labeling Probes for Detecting Protein–Glycoprotein Interactions | Li, Pei-Jhen; Anwar, Mohammad Tarigue; Fan, Chen-Yo; Juang, Duane S.; Lin, Hsin-Yi; Chang, Tsung-Che; Kawade, Sachin Kisan; Chen, Hsiang-Jung; Chen, Yu-Ju ; Tan, Kui-Thong; Lin, Chun-Cheng | Biomacromolecules 21(2), 815-824 | | | |
2015 | Glutathionylspermidine in the Modification of Protein SH Groups: The Enzymology and Its Application to Study Protein Glutathionylation | Jason Ching-Yao Lin; Bing-Yu Chiang; Chi-Chi Chou; Tzu-Chieh Chen; Yi-Ju Chen ; Yu-Ju Chen ; Chun-Hung Lin | Molecules 20(1), 1452-1474 | | | |
2020 | Identification of Conomarphin Variants in the Conus eburneus Venom and the Effect of Sequence and PTM Variations on Conomarphin Conformations | Itang, Corazon Ericka Mae M.; Gaza, Jokent T.; Masacupan, Dan Jethro M.; Batoctoy, Dessa Camille R.; Chen, Yu-Ju ; Nellas, Ricky B.; Yu, Eizadora T. | Marine Drugs 18(10), 503 | | | |
2017 | Identification of Potential Plasma Biomarkers for Nonalcoholic Fatty Liver Disease by Integrating Transcriptomics and Proteomics in Laying Hens | Meng-Tsz Tsai; Yu-Jen Chen; Ching-Yi Chen; Mong-Hsun Tsai; Chia-Li Han; Yu-Ju Chen ; Harry J Mersmann; Shih-Torng Ding | The Journal of Nutrition 147(3), 293-303 | | | |
2008 | Immobilized Metal Affinity Chromatography Revisited: pH/acid Control toward High Selectivity in Phosphoproteomics | Tsai, Chia-Feng; Wang, Yi-Ting; Chen, Yet-Ran; Lai, Chen-Yu; Lin, Pei-Yi; Pan, Kuan-Ting; Chen, Jeou-Yuan ; Khoo, Kay-Hooi ; Chen, Yu-Ju | JOURNAL OF PROTEOME RESEARCH 7(9), 4058-4069 | | | |
2015 | Informatics View on the Challenges of Identifying Missing Proteins From Shotgun Proteomics | Wai-Kok Choong; Hui-Yin Chang; Ching-Tai Chen; Chia-Feng Tsai; Wen-Lian Hsu ; Yu-Ju Chen ; Ting-Yi Sung | Journal of Proteome Research 14(12), 5396-5407 | | | |
2021 | Integrating site-specific peptide reporters and targeted mass spectrometry enables rapid substrate-specific kinase assay at the nanogram cell level | Reyes Aaron James F.; Kitata Reta Birhanu; dela Rosa Mira Anne C.; Wang Yi-Ting; Lin Pei-Yi; Yang Pan-Chyr; Friedler Assaf; Yitzchaik Shlomo; Chen Yu-Ju | Analytica Chimica Acta 1155, 338341 | | | |
2017 | iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm | Hui-Yin Chang; Ching-Tai Chen; Chu-Ling Ko; Yi-Ju Chen; Yu-Ju Chen ; Wen-Lian Hsu ; Chiun-Gung Juo; Ting-Yi Sung | Analytical Chemistry 89(24), 13128-13136 | | | |
2015 | MAGIC: An Automated N-Linked Glycoprotein Identification Tool Using a Y1-Ion Pattern Matching Algorithm and in Silico MS2 Approach | Ke-Shiuan Lynn; Chen-Chun Chen; T. Mamie Lih; Cheng-Wei Cheng; Wan-Chih Su; Chun-Hao Chang; Chia-Ying Cheng; Wen-Lian Hsu ; Yu-Ju Chen ; Ting-Yi Sung | Analytical Chemistry 87(4), 2466-2473 | | | |
2022 | Molecular basis and role of Siglec-7 ligand expression on chronic lymphocytic leukemia B cells | Chang, L.-Y.; Liang, S.-Y.; Lu, S.-C.; Tseng, H.-C.; Tsai, H.-Y.; Tang, C.-J.; Sugata, M.; Chen, Y.-J.; Chen, Y. -J. ; Wu, S.-J.; Lin, K.-I ; Khoo, K.-H. ; Angata, T. | Frontiers in Immunology 13, 840388 | | | |
2019 | Nanomatrix-Assisted Laser Desorption-Ionization Mass Spectrometry for Oligosaccharides Profiling | Elias Gizaw Mernie; Leta Deressa Tolesa; Ming-Jer Lee; Mei-Chun Tseng ; Yu-Ju Chen | | | | |
2021 | Nanoprobe-Based Mass Spectrometry and Fourier Transform Infrared Spectroscopy for Rapid Phospholipid Profiling | Elias Gizaw Mernie; Mei-Chun Tseng; Wen-Ti Wu; Tzu-Ming Liu; Yu-Ju Chen | Journal of the Chinese Chemical Society 69(1), 94-106 | | | |
2020 | Palmitoyl Acyltransferase Activity of ZDHHC13 Regulates Skin Barrier Development Partly by Controlling PADi3 and TGM1 Protein Stability | Li-Ying Chen; Kuo-Ray Lin; Yi-Ju Chen; Yun-Jung Chiang; Kun-Chin Ho; Li-Fen Shen; I-Wen Song; Kai-Ming Liu; Hsin-Fang Yang-Yen; Yu-Ju Chen ; Yuan-Tsong Chen; Fu-Tong Liu ; Jeffrey JY Yen | Journal of Investigative Dermatology 140(5), 959-970.e3 | | | |