| Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
| 2020 | Analysis of genomic distributions of SARS-CoV-2 reveals a dominant strain type with strong allelic associations | Yang, H. C. ; Chen, C. H. ; Wang, J. H.; Liao, H. C.; Yang, C. T.; Chen, C. W.; Lin, Y. C.; Kao, C. H.; Lu, M. Y. J. ; Liao, J. C. | Proceedings of the National Academy of Sciences of the United States of America 117(48), 30679-30686 | | | |
| 2016 | Assembling the Setaria italica L. Beauv. genome into nine chromosomes and insights into regions affecting growth and drought tolerance | Tsai, KJ; Lu, MJ ; Yang, KJ; Li, M; Teng, Y; Chen, S; Ku, MS; Li, WH | Scientific reports 6, 35076 | | | |
| 2020 | Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens. | Vu, Trieu-Duc; Iwasaki, Yuki; Shigenobu, Shuji; Maruko, Akiko; Oshima, Kenshiro; Iioka, Erica; Huang, Chao-Li; Abe, Takashi; Tamaki, Satoshi; Lin, Yi-Wen; Chen, Chih-Kuan; Lu, Mei-Yeh ; Hojo, Masaru; Wang, Hao-Ven; Tzeng, Shun-Fen; Huang, Hao-Jen; Kanai, Akio; Gojobori, Takashi; Chiang, Tzen-Yuh; Sun, H. Sunny; Li, Wen-Hsiung ; Okada, Norihiro | PLoS Genetics 16(6), e1008831 | | | |
| 2019 | Blast fungal genomes show frequent chromosomal changes, gene gains and losses, and effector gene turnover | Gomez Luciano, LB; Tsai, IJ ; Chuma, I; Tosa, Y; Chen, YH; Li, JY; Li, MY; Jade Lu, MY ; Nakayashiki, H; Li, WH | Molecular Biology and Evolution 36(6), 1148-1161 | | | |
| 2021 | Chromosomal-level genome assembly of the semi-dwarf rice Taichung Native 1, an initiator of Green Revolution | Panibe, Jerome P.; Wang, Long; Li, Jengyi; Li, Meng-Yun; Lee, Yi-Chen; Wang, Chang-Sheng; Ku, Maurice S.B.; Lu, Mei-Yeh Jade ; Li, Wen-Hsiung | Genomics 113(4), 2656-2674 | | | |
| 2019 | Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes. | Chang, YM; Lin, HH; Liu, WY; Yu, CP; Chen, HJ; Wartini, PP; Kao, YY; Wu, YH; Lin, JJ; Lu, MJ ; Tu, SL ; Wu, SH ; Shiu, SH; Ku, MSB; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 116(8), 3091-3099 | | | |
| 2024 | Decoding the genome of bloodsucking midge Forcipomyia taiwana (diptera: Ceratopogonidae): Insights into odorant receptor expansion | Ming-Der Lin; Chia-Hsien Chuang; Chih-Hsin Kao; Shu-Hwa Chen; Szu-Chieh Wang; Ping-Heng Hsieh; Guan-Yu Chen; Chun-Chia Mao; Jeng-Yi Li; Mei-Yeh Jade Lu ; Chung-Yen Lin | Insect Biochemistry and Molecular Biology 168, 104115 | | | |
| 2019 | Degradome Sequencing in Plants | Shih-Shun Lin; Yihua Chen; Mei-Yeh Jade Lu | Plant MicroRNAs - Methods and Protocols (USA : MiMB Springer, Humana Press) | | | |
| 2024 | Dual Regulation of Cytochrome P450 Gene Expression by Two Distinct Small RNAs, a Novel tasiRNA and miRNA, in Marchantia polymorpha | Hung, Yu-Ling; Hong, Syuan-Fei; Wei, Wei-Lun; Cheng, Shiuan; Yu, Jia-Zhen; Tjita, Veny; Yong, Qian-Yuan; Nishihama, Ryuichi; Kohchi, Takayuki; Bowman, John L; Chien, Yuan-Chi; Chiu, Yen-Hsin; Yang, Ho-Chun; Lu, Mei-Yeh Jade ; Pan, Zhao-Jun; Wang, Chun-Neng; Lin, Shih-Shun | Plant And Cell Physiology 65(7), 1115-1134 | | | |
| 2018 | Experimental Evolution of Yeast for High-Temperature Tolerance | Huang, CJ; Lu, MY ; Chang, YW; Li, WH | Molecular biology and evolution 35(8), 1823-1839 | | | |
| 2022 | Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages | Lee, Tracy J; Liu, Yuching; Liu, Wei-An; Lin, Yu-Fei; Lee, Hsin-Han; Ke, Huei-Mien; Huang, Jen-Pen ; Lu, Mei-Yeh Jade ; Hsieh, Chia-Lun; Chung, Kuo-Fang ; Liti, Gianni; Tsai, Isheng J | Genome Research 32(5), 864-877 | | | |
| 2011 | Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses | Wang, TY ; Chen, HL; Lu, MY ; Chen, YC; Sung, HM; Mao, CT; Cho, HY; Ke, HM; Hwa, TY; Ruan, SK; Hung, KY; Chen, CK; Li, JY; Wu, YC; Chen, YH; Chou, SP; Tsai, YW; Chu, TC; Shih, CC ; Li, WH ; Shih, MC | Biotechnology for biofuels 4, 24 | | | |
| 2022 | Genome Assembly and Evolutionary Analysis of the Mandarin Duck Aix galericulata Reveal Strong Genome Conservation among Ducks | Ng, Chen Siang; Lai, Cheng-Kuo; Ke, Huei-Mien; Lee, Hsin-Han; Chen, Chih-Feng; Tang, Pin-Chi; Cheng, Hsu-Chen; Lu, Meiyeh J. ; Li, Wen-Hsiung ; Tsai, Isheng Jason | Genome Biology and Evolution 14(6), evac083 | | | |
| 2020 | Genomic Analysis of Mycobacterium tuberculosis Isolates and Construction of a Beijing Lineage Reference Genome | W.-F. Wang; M.-Y. Jade Lu ; T.-J. R. Cheng; Y.-C. Tang; Y.-C. Teng; T.-Y. Hwa; Y.-H. Chen; M.-Y. Li; M.-H. Wu; P.-C. Chuang; R. Jou; C.-H. Wong ; W.-H. Li | Genome Biology and Evolution 12(2), 3890-3905 | | | |
| 2014 | Genomic and transcriptomic analyses of the medicinal fungus Antrodia cinnamomea for its metabolite biosynthesis and sexual development. | Lu, MY ; Fan, WL; Wang, WF; Chen, T; Tang, YC; Chu, FH; Chang, TT; Wang, SY; Li, MY; Chen, YH; Lin, ZS; Yang, KJ; Chen, SM; Teng, YC; Lin, YL; Shaw, JF; Wang, TF ; Li, WH | Proceedings of the National Academy of Sciences of the United States of America 111(44), E4743-E4752 | | | |
| 2024 | Highly efficient capture approach for the identification of diverse inherited retinal disorders | Kao, Hsiao-Jung; Lin, Ting-Yi; Hsieh, Feng-Jen; Chien, Jia-Ying; Yeh, Erh-Chan; Lin, Wan-Jia; Chen, Yi-Hua; Ding, Kai-Hsuan; Yang, Yu; Chi, Sheng-Chu; Tsai, Ping-Hsing; Hsu, Chih-Chien; Hwang, De-Kuang; Tsai, Hsien-Yang; Peng, Mei-Ling; Lee, Shi-Huang; Chau, Siu-Fung; Chen, Chen Yu; Cheang, Wai-Man; Chen, Shih-Jen; Kwok, Pui-Yan; Chiou, Shih-Hwa; Lu, Mei-Yeh Jade ; Huang, Shun-Ping | npj Genomic Medicine 9(1), 4 | | | |
| 2018 | Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells | Chuang, Trees-Juen ; Chen, Yen-Ju; Chen, Chia-Ying; Mai, Te-Lun; Wang, Yi-Da; Yeh, ChungShu; Yang, Min-Yu; Hsiao, Yu-Ting; Chang, Tien-Hsien ; Kuo, Tzu-Chien; Cho, Hsin-Hua; Shen, Chia-Ning ; Kuo, Hung-Chih ; Lu, Mei-Yeh ; Chen, Yi-Hua; Hsieh, Shan-Chi; Chiang, Tai-Wei | NUCLEIC ACIDS RESEARCH 46(7), 3671-3691 | | | |
| 2020 | Maize ANT1 modulates vascular development, chloroplast development, photosynthesis, and plant growth | Liu, WY; Lin, HH; Yu, CP; Chang, CK; Chen, HJ; Lin, JJ; Lu, MY ; Tu, SL; Shiu, SH; Wu, SH ; Ku, MSB; Li, WH | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 117(35), 21747-21756 | | | |
| 2022 | Maize Golden2-like transcription factors boost rice chloroplast development, photosynthesis, and grain yield | Yeh, Su-Ying; Lin, Hsin-Hung; Chang, Yao-Ming ; Chang, Yu-Lun; Chang, Chao-Kang; Huang, Yi-Cin; Ho, Yi-Wen; Lin, Chu-Yin; Zheng, Jun-Ze; Jane, Wann-Neng ; Ng, Chun-Yeung; Lu, Mei-Yeh ; Lai, I-Ling; To, Kin-Ying ; Li, Wen-Hsiung ; Ku, Maurice S B | Plant physiology 188(1), 442-459 | | | |
| 2020 | Molecular asymmetry in the cephalochordate embryo revealed by single-blastomere transcriptome profiling | Lin, C.Y.; Lu, M.Y.J. ; Yue, J.X.; Li, K.L.; Le Petillon, Y.; Yong, L.W.; Chen, Y.H.; Tsai, F.Y.; Lyu, Y.F.; Chen, C.Y.; Hwang, S.P.L. ; Su, Y.H. ; Yu, J.K. | PLOS GENETICS 16(12), e1009294 | | | |
