Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
2009 | Population genomics of domestic and wild yeasts. | Liti, G; Carter, DM; Moses, AM; Warringer, J; Parts, L; James, SA; Davey, RP; Roberts, IN; Burt, A; Koufopanou, V; Tsai, IJ ; Bergman, CM; Bensasson, D; O’Kelly, MJ; van Oudenaarden, A; Barton, DB; Bailes, E; Nguyen, AN; Jones, M; Quail, MA; Goodhead, I; Sims, S; Smith, F; Blomberg, A; Durbin, R; Louis, EJ | Nature 458(7236), 337-41 | | | |
2008 | Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle. | Tsai, IJ ; Bensasson, D; Burt, A; Koufopanou, V | Proceedings of the National Academy of Sciences of the United States of America 105(12), 4957-4962 | | | |
2022 | Possible stochastic sex determination in Bursaphelenchus nematodes | Shinya, Ryoji; Sun, Simo; Dayi, Mehmet; Tsai, Isheng Jason ; Miyama, Atsushi; Chen, Anthony Fu; Hasegawa, Koichi; Antoshechkin, Igor; Kikuchi, Taisei; Sternberg, Paul W. | Nature Communications 13, 2574 | | | |
2019 | Predicting clinical outcomes of cirrhosis patients with hepatic encephalopathy from the fecal microbiome. | Sung, CM; Lin, YF; Chen, KF; Ke, HM; Huang, HY; Gong, YN; Tsai, WS; Lu, MJ ; Cheng, HT; Lin, CY; Kuo, CJ; Tsai, IJ ; Hsieh, SY | Cellular and molecular gastroenterology and hepatology 8(2), 301-318.e2 | | | |
2019 | Sequential changes in the host gut microbiota during infection with the intestinal parasitic nematode Strongyloides venezuelensis | T Afrin; K Murase; A Kounosu; VL Hunt; M Bligh; Y Maeda; A Hino; H Maruyama; IJ Tsai ; T Kikuchi | FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 9, 217 | | | |
2020 | Soil is not a reservoir for Phellinus noxius. | Wu, ZC; Chang, YY; Lai, QJ; Lin, HA; Tzean, SS; Liou, RF; Tsai, IJ ; Chung, CL | Phytopathology 110(2), 362-369 | | | |
2019 | Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution | Chaw, SM ; Liu, YC; Wu, YW; Wang, HY; Lin, CI; Wu, CS; Ke, HM; Chang, LY; Hsu, CY; Yang, HT; Sudianto, E; Hsu, MH; Wu, KP; Wang, LN; Leebens-Mack, JH; Tsai, IJ | Nature Plants 5, 63-73 | | | |
2019 | Structure and diversity of soil bacterial communities in offshore islands | Lin, Y.T.; Lin, Y.F.; Tsai, I.J. ; Chang, E.H.; Jien, S.H.; Lin, Y.J.; Chiu, C.Y. | Scientific Reports 9, 4689 | | | |
2014 | Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA. | Tsai, IJ ; Hunt, M; Holroyd, N; Huckvale, T; Berriman, M; Kikuchi, T | DNA research : an international journal for rapid publication of reports on genes and genomes 21(3), 243-54 | | | |
2023 | The Aphelenchoides genomes reveal substantial horizontal gene transfers in the last common ancestor of free-living and major plant-parasitic nematodes | Lai, CK; Lee, YC; Ke, HM; Lu, MR; Liu, WA; Lee, HH; Liu, YC; Yoshiga, T; Kikuchi, T; Chen, PJ; Tsai, IJ | Molecular ecology resources 23(4), 905-919 | | | |
2022 | The brown root rot fungus Phellinus noxius affects microbial communities in different root-associated niches of Ficus trees | Liu, Tse‐Yen; Chen, Chao‐Han; Yang, Yu‐Liang ; Tsai, Isheng J. ; Ho, Ying‐Ning; Chung, Chia‐Lin | Environmental microbiology 24(1), 276-297 | | | |
2012 | The first green revolution. | Tsai, IJ | Nature reviews. Microbiology 10(5), 314 | | | |
2014 | The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. | Cotton, JA; Lilley, CJ; Jones, LM; Kikuchi, T; Reid, AJ; Thorpe, P; Tsai, IJ ; Beasley, H; Blok, V; Cock, PJ; Eves-van den Akker, S; Holroyd, N; Hunt, M; Mantelin, S; Naghra, H; Pain, A; Palomares-Rius, JE; Zarowiecki, M; Berriman, M; Jones, JT; Urwin, PE | Genome biology 15(3), R43 | | | |
2013 | The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery. | Laing, R; Kikuchi, T; Martinelli, A; Tsai, IJ ; Beech, RN; Redman, E; Holroyd, N; Bartley, DJ; Beasley, H; Britton, C; Curran, D; Devaney, E; Gilabert, A; Hunt, M; Jackson, F; Johnston, SL; Kryukov, I; Li, K; Morrison, AA; Reid, AJ; Sargison, N; Saunders, GI; Wasmuth, JD; Wolstenholme, A; Berriman, M; Gilleard, JS; Cotton, JA | Genome biology 14(8), R88 | | | |
2016 | The genome of Onchocerca volvulus, agent of river blindness. | Cotton, JA; Bennuru, S; Grote, A; Harsha, B; Tracey, A; Beech, R; Doyle, SR; Dunn, M; Hotopp, JC; Holroyd, N; Kikuchi, T; Lambert, O; Mhashilkar, A; Mutowo, P; Nursimulu, N; Ribeiro, JM; Rogers, MB; Stanley, E; Swapna, LS; Tsai, IJ ; Unnasch, TR; Voronin, D; Parkinson, J; Nutman, TB; Ghedin, E; Berriman, M; Lustigman, S | Nature Microbiology 2, 16216 | | | |
2016 | The genome of Strongyloides spp. gives insights into protein families with a putative role in nematode parasitism. | Hunt, VL; Tsai, IJ ; Selkirk, ME; Viney, M | Parasitology , 1-16 | | | |
2014 | The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion. | Bennett, HM; Mok, HP; Gkrania-Klotsas, E; Tsai, IJ ; Stanley, EJ; Antoun, NM; Coghlan, A; Harsha, B; Traini, A; Ribeiro, DM; Steinbiss, S; Lucas, SB; Allinson, KS; Price, SJ; Santarius, TS; Carmichael, AJ; Chiodini, PL; Holroyd, N; Dean, AF; Berriman, M | Genome biology 15(11), 510 | | | |
2013 | The genomes of four tapeworm species reveal adaptations to parasitism. | Tsai, IJ ; Zarowiecki, M; Holroyd, N; Garciarrubio, A; Sanchez-Flores, A; Brooks, KL; Tracey, A; Bobes, RJ; Fragoso, G; Sciutto, E; Aslett, M; Beasley, H; Bennett, HM; Cai, J; Camicia, F; Clark, R; Cucher, M; De Silva, N; Day, TA; Deplazes, P; Estrada, K; Fernandez, C; Holland, PW; Hou, J; Hu, S; Huckvale, T; Hung, SS; Kamenetzky, L; Keane, JA; Kiss, F; Koziol, U; Lambert, O; Liu, K; Luo, X; Luo, Y; Macchiaroli, N; Nichol, S; Paps, J; Parkinson, J; Pouchkina-Stantcheva, N; Riddiford, N; Rosenzvit, M; Salinas, G; Wasmuth, JD; Zamanian, M; Zheng, Y; Cai, X; Soberon, X; Olson, PD; Laclette, JP; Brehm, K; Berriman, M | Nature 496(7443), 57-63 | | | |
2016 | The genomic basis of parasitism in the Strongyloides clade of nematodes. | Hunt, VL; Tsai, IJ ; Coghlan, A; Reid, AJ; Holroyd, N; Foth, BJ; Tracey, A; Cotton, JA; Stanley, EJ; Beasley, H; Bennett, HM; Brooks, K; Harsha, B; Kajitani, R; Kulkarni, A; Harbecke, D; Nagayasu, E; Nichol, S; Ogura, Y; Quail, MA; Randle, N; Xia, D; Brattig, NW; Soblik, H; Ribeiro, DM; Sanchez-Flores, A; Hayashi, T; Itoh, T; Denver, DR; Grant, W; Stoltzfus, JD; Lok, JB; Murayama, H; Wastling, J; Streit, A; Kikuchi, T; Viney, M; Berriman, M | Nature genetics 48(3), 299-307 | | | |
2023 | The mitochondrial genome of Isognomon nucleus and mitogenomics of pteriomorphia (Bivalvia: Autobranchia) | Dreyer, N; de Mattos, FMG; Jain, D; Fong, C-L; De Vivo, M; Wen, YV; Huang, Y-S; Mwihaki, JK; Lee, H-H; Tsai, P-C; Tsao, Y-F; Chan, BKK ; Tsai, IJ ; Machida, RJ; Wang, T-Y ; Wang, J | Journal of Molluscan Studies 89(1), eyad003 | | | |