Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
2009 | IDEAL-Q: An automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation | Chih-Chiang Tsou; Chia-Feng Tasi; Ying-Hao Tsui; Putty-Reddy Sudhir; Yi-Ting Wang; Yu-Ju Chen; Jeou-Yuan Chen; Ting-Yi Sung; Wen-Lian Hsu | IM-IIS-09-001 | | | |
2011 | Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words | Hsin-Nan Lin; Cedric Notredame; Jia-Ming Chang; Ting-Yi Sung; Wen-Lian Hsu | PLoS ONE 6(12), e27872 | | | |
2016 | iTop-Q: an intelligent top-down proteomics quantification tool using the DYAMOND algorithm for charge state deconvolution | Hui-Yin Chang; Ching-Tai Chen; Chiun-Gung Juo; Wen-Lian Hsu; Ting-Yi Sung | | | | |
2012 | Label-free quantitative proteomics and N-glycoproteomics analysis of KRAS-activated human bronchial epithelial cells | Putty-Reddy Sudhir; Chein-Hung Chen; Madireddy Pavana Kumari; Mei-Jung Wang; Chih-Chiang Tsou; Ting-Yi Sung; Jeou-Yuan Chen; Chung-Hsuan Chen | Molecular and Cellular Proteomics 11(10), 901-915 | | | |
2013 | Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices | Jhih-Siang Lai; Cheng-Wei Cheng; Allan Lo; Ting-Yi Sung; Wen-Lian Hsu | BMC Bioinformatics 14, 304 | | | |
2008 | MaXIC-Q: A Fully Automated Generic Tool Using Statistical and Computational Methods for Protein Quantitation Based on Stable Isotope Labeling and LC-MS | Ethan Yin-Hao Tsui; Yi-Hwa Yian; Chih-Chiang Tsou; Paul Chuan-Yih Yu; Yi-Ju Chen; Ke-Shiuan Lynn; Wen-Chi Chou; Yu-Ju Chen; Ting-Yi Sung; Wen-Lian Hsu | TR-IIS-08-004 | | | |
2019 | MinProtMaxVP: Generating a minimized number of protein variant sequences containing all possible variant peptides by solving a set covering problem | Wai-Kok Choong; Jen-Hung Wang; Ting-Yi Sung | TM-IIS-19-001 | | | |
2017 | Multi-Q 2: automated and robust isobaric labeling quantitation analysis with enhanced graphical visualization of protein ratio clustering | Ching-Tai Chen; Cheng-Wei Cheng; Wei-Jhe Hsu; Hui-Yin Chang; Chu-Ling Ko; T. Mamie Lih; Yi-Ju Chen; Yu-Ju Chen; Wen-Lian Hsu; Ting-Yi Sung | | | | |
2006 | NERBio: Using Selected Word Conjunction, Term Normalization, and Global Patterns to Improve Biomedical Named Entity Recognition | Richard Tzong-Han Tsai; Cheng-Lung Sung; Hong-Jie Dai; Hsieh-Chuan Hung; Ting-Yi Sung; Wen-Lian Hsu | BMC Bioinformatics 7(Suppl 5), S11 | | | |
2007 | On the Accuracy of Transmembrane Helix Prediction Methods Using an Updated Benchmark | Allan Lo; Hua-Sheng Chiu; Ting-Yi Sung; Wen-Lian Hsu | TR-IIS-07-010 | | | |
2012 | Phosphoproteomic analysis of human mesenchymal stromal cells during osteogenic differentiation | Ting Lo; Chia-Feng Tsai; Yu-Ru V. Shih; Yi-Ting Wang; Sheng-Chieh Lu; Ting-Yi Sung; Wen-Lian Hsu; Yu-Ju Chen; Oscar K. Lee | Journal of Proteome Research 11(2), 586-598 | | | |
2017 | Phosphoproteomics reveals HMGA1, a CK2 substrate, as a drug-resistant target in non-small cell lung cancer | Yi-Ting Wang; Szu-Hua Pan; Chia-Feng Tsai; Ting-Chun Kuo; Yuan-Ling Hsu; Hsin-Yung Yen; Wai-Kok Choong; Hsin-Yi Wu; Yen-Chen Liao; Tse-Ming Hong; Ting-Yi Sung; Pan-Chyr Yang; Yu-Ju Chen | Scientific Reports 7, 44021 | | | |
2009 | Predicting helix-helix interactions from residue contacts in membrane proteins | Allan Lo; Yi-Yuan Chiu; Einar Andreas Rødland; Ping-Chiang Lyu; Ting-Yi Sung; Wen-Lian Hsu | Bioinformatics 25(8), 996-1003 | | | |
2008 | Predicting RNA-binding sites of proteins using support vector machines and evolutionary information | Cheng-Wei Cheng; Emily Chia-Yu Su; Jenn-Kang Hwang; Ting-Yi Sung; Wen-Lian Hsu | BMC Bioinformatics 9(Suppl 12), S6 | | | |
2009 | Protein subcellular localization prediction of eukaryotes using a knowledge-based approach | Hsin-Nan Lin; Ching-Tai Chen; Ting-Yi Sung; Shinn-Ying Ho; Wen-Lian Hsu | BMC Bioinformatics 10(Suppl 15), S8 | | | |
2014 | Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography | Chia-Feng Tsai; Chuan-Chih Hsu; Jo-Nan Hung; Yi-Ting Wang; Wai-Kok Choong; Ming-Yao Zeng; Pei-Yi Lin; Ruo-Wei Hong; Ting-Yi Sung; Yu-Ju Chen | Analytical Chemistry 86(1), 685-693 | | | |
2013 | Spectrum-based method to generate good decoy libraries for spectral library searching in peptide identifications | Chia-Ying Cheng; Chia-Feng Tsai; Yu-Ju Chen; Ting-Yi Sung; Wen-Lian Hsu | Journal of Proteome Research 12(5), 2305-2310 | | | |
2007 | The Multi-Q Web Server for Multiplexed Protein Quantitation | Chuan-Yih Yu; Yin-Hao Tsui; Yi-Hwa Yian; Ting-Yi Sung; Wen-Lian Hsu | Nucleic Acids Research 35(Web Server issue), W707-712 | | | |
2006 | Various Criteria in the Evaluation of Biomedical Named Entity Recognition | Richard Tzong-Han Tsai; Shih-Hung Wu; Wen-Chi Chou; Yu-Chun Lin; Ding He; Ting-Yi Sung; Wen-Lian Hsu | BMC Bioinformatics 7, 92 | | | |
2018 | WinProphet: a user-friendly pipeline management system based on Trans-Proteomic Pipeline | Ching-Tai Chen; Chu-Ling Ko; Wai-Kok Choong; Jen-Hung Wang; Wen-Lian Hsu; Ting-Yi Sung | | | | |