Issue Date | Title | Author(s) | Relation | scopus | WOS | Fulltext/Archive link |
2022 | EED is required for mouse primordial germ cell differentiation in the embryonic gonad | Lowe, MG; Yen, MR; Hsu, FM; Hosohama, L; Hu, Z; Chitiashvili, T; Hunt, TJ; Gorgy, I; Bernard, M; Wamaitha, SE; Chen, PY ; Clark, AT | Developmental cell 57(12), 1482-1495.e5 | | | |
2022 | Epigenome Bioinformatics in Plants | Chen, PY | | | | |
2022 | Epigenome bioinformatics in rice and plants | Chen, PY | | | | |
2020 | Epigenomic regulation of OTU5 in Arabidopsis thaliana | Hsieh, JW; Yen, MR; Chen, PY | GENOMICS 112(5), 3549-3559 | | | |
2020 | EpiMOLAS: an intuitive web-based framework for genome-wide DNA methylation analysis | Sheng-Yao Su; I-Hsuan Lu; Wen-Chih Cheng; Wei-Chun Chung; Pao-Yang Chen ; Jan-Ming Ho ; Shu-Hwa Chen; Chung-Yen Lin | BMC Genomics 21, 163 | | | |
2019 | Exploring the transcriptome-methylome dynamics in Termitomyces eurhizus | Huang, YC; Hsieh, HM; Lin, CY; Ju, YM; Chen, PY | | | | |
2018 | Exploring the transcriptome-methylome dynamics in Termitomyces mushroom | Hsu, FM; Hsieh, HM; Lu, JH; Hsieh, CJ; Huang, YJ; Yen, MR; Lin, CY; Ju, YM; Chen, PY | | | | |
2017 | Game theory in epigenetic reprogramming: Comment on: “Epigenetic game theory: How to compute the epigenetic control of maternal-to-zygotic transition” by Qian Wang et al. | Hsu, FM; Chen, PY | Physics of life reviews 20, 143-145 | | | |
2017 | H2B ubiquitylation and the histone chaperone Asf1 cooperatively mediate the formation and maintenance of heterochromatin silencing. | Wu, MY; Lin, CY; Tseng, HY; Hsu, FM; Chen, PY ; Kao, CF | Nucleic acids research 45(14), 8225-8238 | | | |
2022 | HISTONE DEACETYLASE 15 and MOS4-associated complex subunits 3A/3B coregulate intron retention of ABA-responsive genes | Tu, YT; Chen, CY; Huang, YS; Chang, CH; Yen, MR; Hsieh, JA; Chen, PY ; Wu, K | Plant physiology 190(1), 882-897 | | | |
2019 | Investigation of Genome-wide DNA Methylation in Plants, Animals and Fungi | Chen, PY | | | | |
2020 | MethGET: web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression | Teng, CS; Wu, BH; Yen, MR; Chen, PY | BMC GENOMICS 21, 375 | | | |
2023 | MethylC-analyzer: a comprehensive downstream pipeline for the analysis of genome-wide DNA methylation | Lu, RJ; Lin, PY; Yen, MR; Wu, BH; Chen, PY | Botanical studies 64(1), 1 | | | |
2023 | Methylome Imputation by Methylation Patterns | Chang, YS; Yen, MR; Chen, PY | Methods in molecular biology (Clifton, N.J.) (New York, USA : Humana) | | | |
2020 | Mycena genomes resolve the evolution of fungal bioluminescence | Ke, Huei-Mien; Lee, Hsin-Han; Lin, Chan-Yi Ivy; Liu, Yu-Ching; Lu, Min R.; Hsieh, Jo-Wei Allison; Chang, Chiung-Chih; Wu, Pei-Hsuan; Lu, Meiyeh Jade ; Li, Jeng-Yi; Shang, Gaus; Lu, Rita Jui-Hsien; Nagy, László G.; Chen, Pao-Yang ; Kao, Hsiao-Wei; Tsai, Isheng Jason | Proceedings of the National Academy of Sciences 117(49), 31267-31277 | | | |
2017 | Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize. | Hsu, FM; Yen, MR; Wang, CT; Lin, CY; Wang, CJR ; Chen, PY | Epigenetics & chromatin 10, 42 | | | |
2019 | Polybenzyl glutamate biocompatible scaffold promotes the efficiency of retinal differentiation toward retinal ganglion cell lineage from human-induced pluripotent stem cells | Ta-Ching Chen; Pin-Yi She; Dong Feng Chen; Jui-Hsien Lu; Chang-Hao Yang; Ding-Siang Huang; Pao-Yang Chen ; Chen-Yu Lu; Kin-Sang Cho; Hsin-Fu Chen; Wei-Fang Su | International Journal of Molecular Sciences 20(1), 178 | | | |
2017 | Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development. | Lin, JY ; Le, BH; Chen, M; Henry, KF; Hur, J; Hsieh, TF; Chen, PY ; Pelletier, JM; Pellegrini, M; Fischer, RL; Harada, JJ; Goldberg, RB | Proceedings of the National Academy of Sciences of the United States of America 114(45), E9730-E9739 | | | |
2019 | SWI3B and HDA6 interact and are required for transposon silencing in Arabidopsis | Yang, Jie; Yuan, Lianyu; Yen, Ming‐Ren; Zheng, Feng; Ji, Rujun; Peng, Tao; Gu, Dachuan; Yang, Songguang; Cui, Yuhai; Chen, Pao-Yang ; Wu, Keqiang; Liu, Xuncheng | The Plant Journal Early View | | | |
2019 | The change of genome-wide DNA methylation during rice transformation | Chen, PY | | | | |